Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31860 253 / 5e-84 Protein phosphatase 2C family protein (.1.2) AT2G25070 247 / 8e-82 Protein phosphatase 2C family protein (.1) AT3G51470 95 / 5e-23 Protein phosphatase 2C family protein (.1) AT1G48040 94 / 1e-22 Protein phosphatase 2C family protein (.1) AT2G33700 94 / 2e-22 Protein phosphatase 2C family protein (.1) AT2G25620 91 / 2e-21 AtDBP1 DNA-binding protein phosphatase 1 (.1) AT3G62260 90 / 4e-21 Protein phosphatase 2C family protein (.1.2) AT1G18030 81 / 5e-18 Protein phosphatase 2C family protein (.1.2) AT3G17250 81 / 9e-18 Protein phosphatase 2C family protein (.1) AT5G53140 80 / 2e-17 Protein phosphatase 2C family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G017701 [exp] 317 / 4e-109 AT4G31860 609 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.006G265100 [exp] 292 / 3e-99 AT4G31860 606 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.003G183800 [exp] 235 / 5e-77 AT4G31860 547 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.001G043000 [exp] 234 / 2e-76 AT4G31860 548 / 0.0 Protein phosphatase 2C family protein (.1.2) Potri.007G058700 [exp] 102 / 8e-26 AT3G51470 502 / 3e-179 Protein phosphatase 2C family protein (.1) Potri.018G033000 [exp] 98 / 5e-24 AT2G25620 478 / 3e-169 DNA-binding protein phosphatase 1 (.1) Potri.006G248400 [exp] 98 / 6e-24 AT2G25620 478 / 5e-169 DNA-binding protein phosphatase 1 (.1) Potri.005G102500 [exp] 98 / 6e-24 AT3G51470 496 / 8e-177 Protein phosphatase 2C family protein (.1) Potri.010G151500 [exp] 97 / 1e-23 AT1G48040 418 / 8e-146 Protein phosphatase 2C family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003423 [exp] 263 / 6e-88 AT4G31860 612 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10042416 [exp] 258 / 6e-86 AT4G31860 610 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026885 [exp] 259 / 7e-86 AT4G31860 584 / 0.0 Protein phosphatase 2C family protein (.1.2) Lus10026253 [exp] 256 / 4e-85 AT2G25070 607 / 0.0 Protein phosphatase 2C family protein (.1) Lus10026886 [exp] 147 / 2e-41 AT2G44880 376 / 3e-124 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10013124 [exp] 99 / 4e-24 AT2G25620 502 / 7e-179 DNA-binding protein phosphatase 1 (.1) Lus10013213 [exp] 97 / 2e-23 AT2G33700 541 / 0.0 Protein phosphatase 2C family protein (.1) Lus10008091 [exp] 96 / 2e-23 AT2G25620 488 / 1e-173 DNA-binding protein phosphatase 1 (.1) Lus10017106 [exp] 96 / 3e-23 AT1G48040 422 / 2e-147 Protein phosphatase 2C family protein (.1) Lus10037832 [exp] 96 / 5e-23 AT1G48040 429 / 3e-150 Protein phosphatase 2C family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0238 [poplar] [flax] PP2C PF00481 [poplar] [flax] PP2C Protein phosphatase 2C
Representative CDS sequence Show only first row Show all	>Potri.018G017800.2 pacid=42800980 polypeptide=Potri.018G017800.2.p locus=Potri.018G017800 ID=Potri.018G017800.2.v4.1 annot-version=v4.1 ATGATGGTTTGGTTTTCTCCCAAAATACTAAAGATTGTTTGTAGGGTAGGGTTTGTTTGGAATGTTGAAATTTCCTATAACTTTTCTTCTGCCTCAGCTA ATCAATTCACCTTTTCTCCAAGTTTTAAGGCTTACGATTTGTCTATAGATCACAAACCTGATCTTGTGGCTGAGGAAGAACGGATTTTAGAAGCTGGTGG TTGCATACATGATGGGCGGGTCAATGGCATTTTAAATCTTTCAAGGGCTATAGGTGATGTGGAGTTCAAGCAGAATAAATTTCTACCCGTTGAAAAGCAA ATCGTGACAGCCGATCCAGATATAAACACTCTTGAGCTTTGTGATGACGATGATTTTCTTGTGCTGGCATGTGATGGAATATGGGATTGCATGTCAAGCC AGGAACTAGTAGATTTTATTCATGAACAGCTACATTCGGAAAACAAGCTCTCTGCAGTGTGTGAGAGAGTGCTTGATTGGTGTTTGGCGCCATCAACAGC AGGTGGTGAGGGATGTGACAACATGACCATGATCGTGGTACAGTTTAAGAAACCTATAGGCCCCCCTGCTTCCGCAGATGAGCAATCCTCACAATCTGGA CCTGCTGATGCCGGATCTAAACCAGAGGAAAGTTAA
AA sequence Show only first row Show all	>Potri.018G017800.2 pacid=42800980 polypeptide=Potri.018G017800.2.p locus=Potri.018G017800 ID=Potri.018G017800.2.v4.1 annot-version=v4.1 MMVWFSPKILKIVCRVGFVWNVEISYNFSSASANQFTFSPSFKAYDLSIDHKPDLVAEEERILEAGGCIHDGRVNGILNLSRAIGDVEFKQNKFLPVEKQ IVTADPDINTLELCDDDDFLVLACDGIWDCMSSQELVDFIHEQLHSENKLSAVCERVLDWCLAPSTAGGEGCDNMTMIVVQFKKPIGPPASADEQSSQSG PADAGSKPEES

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31860			Protein phosphatase 2C family ...		Potri.018G017800 [exp]	0	1
AT5G43230			unknown protein		Potri.010G057700 [exp]	1.00	0.8844
AT3G12120		FAD2	fatty acid desaturase 2 (.1.2)		Potri.016G046200 [exp]	5.47	0.8655	FAD2.3
AT1G67570			Protein of unknown function (D...		Potri.008G178100 [exp]	5.65	0.8664
AT5G13420			Aldolase-type TIM barrel famil...		Potri.003G161900 [exp]	7.87	0.8750
AT2G05940		RIPK	RPM1-induced protein kinase, P...		Potri.003G066300 [exp]	8.30	0.8710
AT5G22360		ATVAMP714	vesicle-associated membrane pr...		Potri.001G219200 [exp]	10.95	0.8396
AT1G19530			unknown protein		Potri.002G034500 [exp]	12.00	0.8528
AT1G16220			Protein phosphatase 2C family ...		Potri.001G473300 [exp]	12.72	0.8579
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.008G180400 [exp]	18.70	0.8369
					Potri.013G028450 [exp]	20.44	0.8298

Compare expression of checked genes

Potri.018G017800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.