Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10840 1070 / 0 Endomembrane protein 70 protein family (.1) AT5G25100 1062 / 0 Endomembrane protein 70 protein family (.1.2) AT2G24170 994 / 0 Endomembrane protein 70 protein family (.1) AT3G13772 942 / 0 AtTMN7 transmembrane nine 7 (.1) AT1G55130 926 / 0 AtTMN6 transmembrane nine 6, Endomembrane protein 70 protein family (.1) AT5G35160 516 / 2e-176 Endomembrane protein 70 protein family (.1.2) AT4G12650 481 / 2e-162 Endomembrane protein 70 protein family (.1) AT2G01970 355 / 1e-114 Endomembrane protein 70 protein family (.1) AT5G37310 337 / 1e-107 Endomembrane protein 70 protein family (.1) AT1G14670 330 / 3e-105 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264500 [exp] 1174 / 0 AT5G10840 1059 / 0.0 Endomembrane protein 70 protein family (.1) Potri.006G184200 [exp] 1047 / 0 AT2G24170 961 / 0.0 Endomembrane protein 70 protein family (.1) Potri.018G106600 [exp] 1045 / 0 AT2G24170 971 / 0.0 Endomembrane protein 70 protein family (.1) Potri.003G038700 [exp] 946 / 0 AT3G13772 1085 / 0.0 transmembrane nine 7 (.1) Potri.006G189300 [exp] 543 / 0 AT5G35160 1122 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.018G113500 [exp] 534 / 0 AT5G35160 1127 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.002G217300 [exp] 497 / 6e-169 AT4G12650 1122 / 0.0 Endomembrane protein 70 protein family (.1) Potri.014G172200 [exp] 496 / 2e-168 AT4G12650 1115 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 345 / 1e-110 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026254 [exp] 1111 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042415 [exp] 1110 / 0 AT5G10840 1129 / 0.0 Endomembrane protein 70 protein family (.1) Lus10000222 [exp] 1044 / 0 AT5G10840 1071 / 0.0 Endomembrane protein 70 protein family (.1) Lus10015624 [exp] 955 / 0 AT3G13772 1133 / 0.0 transmembrane nine 7 (.1) Lus10037643 [exp] 950 / 0 AT3G13772 1134 / 0.0 transmembrane nine 7 (.1) Lus10027831 [exp] 546 / 0 AT5G35160 1104 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10005060 [exp] 525 / 8e-180 AT5G35160 1100 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10016072 [exp] 513 / 3e-175 AT4G12650 1123 / 0.0 Endomembrane protein 70 protein family (.1) Lus10019073 [exp] 400 / 8e-132 AT5G35160 749 / 0.0 Endomembrane protein 70 protein family (.1.2) Lus10031308 [exp] 332 / 1e-105 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [poplar] [flax] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Potri.018G018400.1 pacid=42801002 polypeptide=Potri.018G018400.1.p locus=Potri.018G018400 ID=Potri.018G018400.1.v4.1 annot-version=v4.1 ATGGCGAGATCTCGATCTCTGCTGTTAACGATCTGTACGATTCTCGCAATCCTAATCCATGGCGCGCACTCCTTCTACCTCCCTGGCGTCGCTCCTCAGG ATTTCTTTAACGGTGCTGAGTTGACGGTGAAAGTGAACAAATTGACCTCTATAAAGACACAACTTCCGTACTCATACTATACTCTTCCTTTCTGTACCCC ATCCAAGATTGTAGACAGTGCAGAGAATCTTGGGGAAGTGCTTCGTGGTGACCGCATTGAAAATTCCCCCTACACGTTTAAAATGGGGGATGCAAAGATG TGCAATATTCTTTGCCGGAAAACACTTGATGCCAAAACCGCAAAGGCATTTAAAGAGAAGATTGATGATGAGTATCGGGTTAACATGATCCTTGATAACC TTCCTCTTGTTGTTCCCATGCAAAGGCCGGATCAGGAATCTCTCCCTGTTTATCAGCTTGGTTATCATGTTGGGCTCAAAGGCCAATACAGTGGGAGCAA AGAAGAAAAGTATTTTATCCACAATCACCTGTCATTCATTGTCAAGTATCATAAAGATACGCAATCTGATTCTGCAAGGATTGTTGGATTTGAAGTAAAA CCATTCAGTGTTAAACATGCATATGAAGGGAAGTGGAGTGATGAGAATCCTCGTTTAACAACCTGTGACCCCCACACAAGACATACTGTCGTTAATTCTA ACACTCCTCAAGAAGTTGAAGACAAAGCTGAAATCATTTTCACATATGATGTTGAATTCCAGGATAGCGATGTGAAGTGGGCCTCCAGATGGGATGCCTA TCTCTTAATGACTGATGACCAAATTCACTGGTTCTCAATTGTCAATTCATTGATGATTGTCCTCTTCCTCTCGGGGATGGTGGCTATGATCATGCTACGA ACCCTTTACCGTGATATATCCAAGTACAATGAACTTGAGACCCAGGAAGAAGCTCAAGAAGAGACTGGATGGAAGCTTGTTCATGGAGATGTTTTCAGGC CCCCATCAAATTCGGACTTGTTGTGTGTCTATGTTGGAACCGGTGTTCAGTTTTTTGGAATGATCCTTGTTACCATGATTTTTGCGATTCTTGGATTCCT TTCCCCTTCAAACAGAGGTGGTCTTATGACAGCCATGCTCTTGCTTTGGGTTTTCATGGGCATTTTTGCTGGCTATGCCTCATCCCGGTTATATAAAATG TTCAAAGGATCAGAATGGAAGAAAATTGCTCTCAGGACTGCAGTCATGTTCCCAGGGATCGTCTCTGCCATTTTCTTTGTCTTGAATGCTCTCATCTGGG GCCAGAAATCATCTGGCGCTGTGCCATTTGGAACGATGTTTGCTCTGGTATTCTTATGGTTTGGAATTTCAGTTCCGCTAGTGTTTGTTGGAAGTTATAT TGGATCCAAGAAGCCAGCAATTGAGGACCCTGTGAAGACAAATAAAATACCAAGACAAATCCCAGAGCAAGCATGGTACATGAACCCAGCCTTCTCAATT CTAATAGGAGGAATTCTTCCATTTGGAGCTGTTTTCATCGAGCTGTTCTTCATTCTCACCTCGATCTGGCTGAATCAATTCTACTACATCTTTGGTTTCC TGTTCCTCGTTTTTGCAATCCTCATTGTCACTTGCGCAGAAATAACCATCGTGCTCTGCTACTTCCAGTTATGCAGTGAGGACTATCTCTGGTGGTGGAG ATCTTACCTTACATCTGGTTCCTCAGCGCTGTACCTCTTCCTTTATGCCACATTCTACTTCTTCACAAAGCTTGAGATAACCAAGCTGGTTTCAGGGGCA TTATACTTTGGTTACATGCTAATTGCATCGTACGCCTTCTTCGTACTAACCGGCACAATCGGATTCTATGCCTGCTTCTGGTTCACAAGGCTCATCTATT CTTCAGTGAAAATTGATTAA
AA sequence Show only first row Show all	>Potri.018G018400.1 pacid=42801002 polypeptide=Potri.018G018400.1.p locus=Potri.018G018400 ID=Potri.018G018400.1.v4.1 annot-version=v4.1 MARSRSLLLTICTILAILIHGAHSFYLPGVAPQDFFNGAELTVKVNKLTSIKTQLPYSYYTLPFCTPSKIVDSAENLGEVLRGDRIENSPYTFKMGDAKM CNILCRKTLDAKTAKAFKEKIDDEYRVNMILDNLPLVVPMQRPDQESLPVYQLGYHVGLKGQYSGSKEEKYFIHNHLSFIVKYHKDTQSDSARIVGFEVK PFSVKHAYEGKWSDENPRLTTCDPHTRHTVVNSNTPQEVEDKAEIIFTYDVEFQDSDVKWASRWDAYLLMTDDQIHWFSIVNSLMIVLFLSGMVAMIMLR TLYRDISKYNELETQEEAQEETGWKLVHGDVFRPPSNSDLLCVYVGTGVQFFGMILVTMIFAILGFLSPSNRGGLMTAMLLLWVFMGIFAGYASSRLYKM FKGSEWKKIALRTAVMFPGIVSAIFFVLNALIWGQKSSGAVPFGTMFALVFLWFGISVPLVFVGSYIGSKKPAIEDPVKTNKIPRQIPEQAWYMNPAFSI LIGGILPFGAVFIELFFILTSIWLNQFYYIFGFLFLVFAILIVTCAEITIVLCYFQLCSEDYLWWWRSYLTSGSSALYLFLYATFYFFTKLEITKLVSGA LYFGYMLIASYAFFVLTGTIGFYACFWFTRLIYSSVKID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10840			Endomembrane protein 70 protei...		Potri.018G018400 [exp]	0	1
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.008G105300 [exp]	1.00	0.9525	ACLB.2
AT3G24840			Sec14p-like phosphatidylinosit...		Potri.002G243000 [exp]	5.47	0.9422
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	5.74	0.9477	UBP20.2
AT3G59360		UTR6, ATUTR6	UDP-galactose transporter 6 (....		Potri.017G035800 [exp]	6.00	0.9396
AT1G14830		DRP1C, ADL5, AD...	DYNAMIN RELATED PROTEIN 1C, AR...		Potri.010G105900 [exp]	7.21	0.9486	Pt-ADL5.1
AT3G53520		ATUXS1, UXS1	UDP-glucuronic acid decarboxyl...		Potri.016G080500 [exp]	10.39	0.9194
AT1G76550			Phosphofructokinase family pro...		Potri.005G257800 [exp]	11.31	0.9358
AT1G06890			nodulin MtN21 /EamA-like trans...		Potri.019G128900 [exp]	11.83	0.9249
AT5G15490		UGD3	UDP-glucose dehydrogenase 3, U...		Potri.004G118600 [exp]	13.22	0.9368
AT5G05010			clathrin adaptor complexes med...		Potri.012G125500 [exp]	15.23	0.9436

Compare expression of checked genes

Potri.018G018400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.