Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22860 522 / 0 Serine carboxypeptidase S28 family protein (.1.2) AT2G24280 429 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) AT5G65760 399 / 2e-134 Serine carboxypeptidase S28 family protein (.1) AT3G28680 168 / 3e-49 Serine carboxypeptidase S28 family protein (.1) AT2G18080 101 / 7e-23 EDA2 embryo sac development arrest 2, Serine carboxypeptidase S28 family protein (.1) AT4G36195 99 / 7e-22 Serine carboxypeptidase S28 family protein (.1.2.3) AT4G36190 94 / 2e-20 Serine carboxypeptidase S28 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G002200 [exp] 630 / 0 AT5G22860 534 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.010G232300 [exp] 600 / 0 AT5G22860 528 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213500 [exp] 600 / 0 AT5G22860 593 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213300 [exp] 595 / 0 AT5G22860 588 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213400 [exp] 590 / 0 AT5G22860 514 / 8e-180 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213200 [exp] 587 / 0 AT5G22860 518 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G212900 [exp] 580 / 0 AT5G22860 481 / 6e-167 Serine carboxypeptidase S28 family protein (.1.2) Potri.009G002300 [exp] 515 / 2e-180 AT5G22860 449 / 1e-154 Serine carboxypeptidase S28 family protein (.1.2) Potri.001G213000 [exp] 446 / 2e-154 AT5G22860 371 / 6e-126 Serine carboxypeptidase S28 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005354 [exp] 568 / 0 AT5G22860 557 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10021400 [exp] 560 / 0 AT5G22860 558 / 0.0 Serine carboxypeptidase S28 family protein (.1.2) Lus10008358 [exp] 551 / 0 AT5G22860 486 / 1e-168 Serine carboxypeptidase S28 family protein (.1.2) Lus10005353 [exp] 515 / 3e-180 AT5G22860 476 / 3e-165 Serine carboxypeptidase S28 family protein (.1.2) Lus10021325 [exp] 398 / 7e-134 AT2G24280 515 / 5e-180 alpha/beta-Hydrolases superfamily protein (.1) Lus10011603 [exp] 392 / 8e-132 AT5G65760 753 / 0.0 Serine carboxypeptidase S28 family protein (.1) Lus10017002 [exp] 355 / 2e-118 AT2G24280 447 / 6e-155 alpha/beta-Hydrolases superfamily protein (.1) Lus10039645 [exp] 182 / 2e-52 AT5G65760 374 / 7e-127 Serine carboxypeptidase S28 family protein (.1) Lus10028365 [exp] 102 / 5e-23 AT4G36195 655 / 0.0 Serine carboxypeptidase S28 family protein (.1.2.3) Lus10041817 [exp] 66 / 2e-11 AT4G36190 325 / 1e-108 Serine carboxypeptidase S28 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF05577 [poplar] [flax] Peptidase_S28 Serine carboxypeptidase S28
Representative CDS sequence Show only first row Show all	>Potri.018G018500.1 pacid=42801677 polypeptide=Potri.018G018500.1.p locus=Potri.018G018500 ID=Potri.018G018500.1.v4.1 annot-version=v4.1 ATGAAGTCTCCAATGGTTGCACTTCAATGGCTTCCAATACTAATGCTCATTCCAGTTATGCACTCAACTTCTGTGACTGCAAAAGGGTTGCGCATACCGC GGTTGGCTCGACTTGGAGGAATGAACAATCCAAGGGTGAAACCACTGGGAAGAATTTCAAGGAATTCTGCAAGTTTTGCTGCATCAAGTATTTATCACAA CTTGCAGACATTTTATTACAATCAAACACTTGATCACTTCAATTATAGGCCTGATAGCTTTGACATGTTTCAACAAAGATATGTCATCAACTCAAAGTAT TGGGGTGGTGCTAATTCCAATGCACCGATCTTCGTTTACTTTGGGGAAGAAGCACCATTAGAAAATGACTTTGGTGATATCGGGATCCTCGCAGAAAATG CCCATCGTTTTAAGGCTCTTCAAGTTTACATAGAGCACCGATACTATGGGAAATCAATCCCATTTGGATCAAGGAATGAAGCTTTCAAAAATGCTAGTAC ACTTGGATATTTCAACTCAGCTCAAGCTTTAGCAGACTATGCAGAGATAATCATCCACGTAAATGAGAAATTCCATGTTCAACGCTCTCCTGTGATTGTC GTTGGAGCATCATATGGTGGAATGCTTGCTTCCTGGTTCCGGCTGAAATATCCACATATTGCCCTCGGAGCTCTGGCCTCTTCAGCTCCAATCCTGTACT TCACTGATATAACACCAGCGCATGCTTATGTTTCTATTGTCACCAAAGATTTCAGAGAAGACAGTCAGAGTTGCCATGATACTATAAAAAAGTCATGGAC TGTGATTGACAAAATTGCTTCCGAACCTGATGGTCTTTCAATCCTGAGCAAGAAATTCGAGACTTGCAAGCCCTTGAACAATTCTTCTGAGCTCACAGAC TACTTGGCCGGCATATATATGGCTGCTGCTCAATATGATGCGCCTCCATCCTATCCAGTAACCATGGTCTGTAAAAGCATTGATGAACCTTCCTTTGGAA ATGACATTCTAGGTAGAATATTTGCCGGCATGGTTGCTTATCAAGGAGAACTCCCATGTTATGTTAACGAACCCACCAAAGAAACCGAAACCGATGTTGG TTGGAGTTGGCAGACGTGTGCTGACATGGTGATACCTTTCGGCATCAGCAATGATTCCATGTTTCAACCATATCCATTTGATCTAAATGCTTATATCAAC GACTGCAAGGACGAATACGGAGTCCCTCCTAGACCACATTGGGTTACTACTTATTTTGGAGGCCATGATATAAAGCTGATTCTCAAACGGTTCGGTAGTA ACATCATTTTCTCCAATGGACTAAGAGATCCTTACAGCAGCGGCGGGGTGTTGCAGAACATATCAGACAGTGTTGTTGCTATCACTACTGTGAAGGGTTC TCATTGCTTGGATGTACTTGCAACAACAAAAAGCGATCCGCAATGGTTGGTAGCACAAAGAAAGGAGGAGGTCCGGATCATTCGAAAATGGATTAGAAAT TACTTCTCGGATTTGGATGCTTGCGAAAAAGGAAAACATCGCTAG
AA sequence Show only first row Show all	>Potri.018G018500.1 pacid=42801677 polypeptide=Potri.018G018500.1.p locus=Potri.018G018500 ID=Potri.018G018500.1.v4.1 annot-version=v4.1 MKSPMVALQWLPILMLIPVMHSTSVTAKGLRIPRLARLGGMNNPRVKPLGRISRNSASFAASSIYHNLQTFYYNQTLDHFNYRPDSFDMFQQRYVINSKY WGGANSNAPIFVYFGEEAPLENDFGDIGILAENAHRFKALQVYIEHRYYGKSIPFGSRNEAFKNASTLGYFNSAQALADYAEIIIHVNEKFHVQRSPVIV VGASYGGMLASWFRLKYPHIALGALASSAPILYFTDITPAHAYVSIVTKDFREDSQSCHDTIKKSWTVIDKIASEPDGLSILSKKFETCKPLNNSSELTD YLAGIYMAAAQYDAPPSYPVTMVCKSIDEPSFGNDILGRIFAGMVAYQGELPCYVNEPTKETETDVGWSWQTCADMVIPFGISNDSMFQPYPFDLNAYIN DCKDEYGVPPRPHWVTTYFGGHDIKLILKRFGSNIIFSNGLRDPYSSGGVLQNISDSVVAITTVKGSHCLDVLATTKSDPQWLVAQRKEEVRIIRKWIRN YFSDLDACEKGKHR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G22860			Serine carboxypeptidase S28 fa...		Potri.018G018500 [exp]	0	1
					Potri.003G056850 [exp]	3.46	0.7488
AT3G26932		DRB3	dsRNA-binding protein 3 (.1.2)		Potri.009G152900 [exp]	10.39	0.6418
AT1G02630			Nucleoside transporter family ...		Potri.018G130000 [exp]	13.63	0.6583
AT3G59310			Eukaryotic protein of unknown ...		Potri.014G151800 [exp]	15.16	0.6161
					Potri.003G056450 [exp]	15.49	0.6450
AT3G02310	MADS	AGL4, SEP2	SEPALLATA 2, AGAMOUS-like 4, K...		Potri.017G099700 [exp]	23.45	0.5390
AT5G62065			Bifunctional inhibitor/lipid-t...		Potri.015G142100 [exp]	27.42	0.6246
AT5G66815			unknown protein		Potri.014G034500 [exp]	40.60	0.5876
AT4G32810		MAX4, CCD8, ATC...	MORE AXILLARY BRANCHING 4, car...		Potri.018G044100 [exp]	44.30	0.5988
					Potri.019G005913 [exp]	49.47	0.5878

Compare expression of checked genes

Potri.018G018500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.