Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31820 630 / 0 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) AT2G14820 519 / 2e-178 MEL3, NPY2 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) AT4G37590 493 / 1e-168 MEL1, NPY5 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) AT5G67440 486 / 7e-166 MEL2, NPY3 NAKED PINS IN YUC MUTANTS 3, MAB4/ENP/NPY1-LIKE 2, Phototropic-responsive NPH3 family protein (.1.2) AT2G23050 453 / 1e-154 MEL4, NPY4 NAKED PINS IN YUC MUTANTS 4, MAB4/ENP/NPY1-LIKE 4, Phototropic-responsive NPH3 family protein (.1) AT1G67900 430 / 2e-143 Phototropic-responsive NPH3 family protein (.1.2.3) AT3G26490 395 / 1e-130 Phototropic-responsive NPH3 family protein (.1) AT5G47800 365 / 2e-119 Phototropic-responsive NPH3 family protein (.1) AT5G03250 354 / 1e-114 Phototropic-responsive NPH3 family protein (.1) AT1G30440 343 / 2e-109 Phototropic-responsive NPH3 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G264300 [exp] 1074 / 0 AT4G31820 623 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Potri.001G295600 [exp] 590 / 0 AT2G14820 771 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.009G089500 [exp] 575 / 0 AT2G14820 732 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.005G146400 [exp] 567 / 0 AT2G14820 671 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Potri.008G186100 [exp] 466 / 2e-157 AT1G67900 833 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.010G046800 [exp] 459 / 6e-155 AT1G67900 861 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Potri.016G003700 [exp] 407 / 6e-135 AT5G47800 705 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.006G003000 [exp] 400 / 8e-133 AT5G47800 692 / 0.0 Phototropic-responsive NPH3 family protein (.1) Potri.017G048200 [exp] 387 / 2e-126 AT5G64330 993 / 0.0 ROOT PHOTOTROPISM 3, NON-PHOTOTROPIC HYPOCOTYL 3, Phototropic-responsive NPH3 family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042414 [exp] 754 / 0 AT4G31820 612 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10026255 [exp] 689 / 0 AT4G31820 557 / 0.0 NAKED PINS IN YUC MUTANTS 1, MACCHI-BOU 4, ENHANCER OF PINOID, Phototropic-responsive NPH3 family protein (.1) Lus10014632 [exp] 572 / 0 AT2G14820 741 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10033796 [exp] 563 / 0 AT2G14820 735 / 0.0 NAKED PINS IN YUC MUTANTS 2, MAB4/ENP/NPY1-LIKE 3, Phototropic-responsive NPH3 family protein (.1) Lus10011525 [exp] 528 / 0 AT4G37590 579 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10019297 [exp] 520 / 2e-179 AT4G37590 569 / 0.0 NAKED PINS IN YUC MUTANTS 5, MAB4/ENP/NPY1-LIKE 1, Phototropic-responsive NPH3 family protein (.1) Lus10000443 [exp] 443 / 2e-148 AT1G67900 797 / 0.0 Phototropic-responsive NPH3 family protein (.1.2.3) Lus10039099 [exp] 388 / 2e-127 AT5G47800 655 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10023274 [exp] 362 / 5e-117 AT1G30440 910 / 0.0 Phototropic-responsive NPH3 family protein (.1) Lus10015871 [exp] 358 / 1e-115 AT5G03250 666 / 0.0 Phototropic-responsive NPH3 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0033 [poplar] [flax] POZ PF00651 [poplar] [flax] BTB BTB/POZ domain CL0033 [poplar] [flax] PF03000 [poplar] [flax] NPH3 NPH3 family
Representative CDS sequence Show only first row Show all	>Potri.018G018600.2 pacid=42801537 polypeptide=Potri.018G018600.2.p locus=Potri.018G018600 ID=Potri.018G018600.2.v4.1 annot-version=v4.1 ATGAAGTTTATGAAGTTGGGGTCCAAGCCTGATGCATTTCAAGCTGATGGCAAATCTCTCAGGTATGTGGCATCCGAACTGGCAGCAGATGTCATCATAA ATGTTGGAGAAGTTAAGTTTAATCTCCACAAGTTCCCTCTCTTGTCAAAGAGCAATCGCTTGCAAAAGCTTGTGTCAAAAGCTGGTGAGAACTCTGATGA AATTGATATGGTTGATTTTCCTGGTGGGCCAAAGGCTTTTGAAATTTGTGCCAAATTCTGCTATGGAATGATAGTTACTCTCAACGCTTACAATGTTGTT GCTGCTCGTTGTGCGGCTGAGTACCTCGAGATGACTGAGGACGTTGACCGAGGGAACCTTATTTTTAAAATTGAGGTATTTCTGAACTCCAGTATCTTCC GTAGCTGGAAGGATTCCATTATTGTTCTTCAGACCACCAAATCTCTTCTGCCGTGGTCTGAAGATCTGAAGATTGTGGGCAGGTGCATAGATTCCATTGC ATCTAAAACCTCTGTGGACCCTGCAAGCATTACTTGGTCCTACACATATAACCGTAAGTTGTCAGTGCCCGATAAAATAGTCGAGGAAGGGATAAATTTC AGAGAGAAAATTGAATCTGTTCCTAAGGATTGGTGGGTTGAAGATATATGTGAACTGGATATCGATCTCTACAAGAGAGTCATGATCACTGTGAAATCAA AGGGAAGAATGGATGGTAAAGTGATTGGGGAGGCACTGAAAACTTACGCGGTCAGATGGCTGCCAGATTCATTTGATGACTCAGTATCTGATGCTCGTAC TTGGAGGTACAAATATCTGGTAGAAACACTCATTTGTTTGTTGCCTCCAGACAAGGGTGTGGGTTGTTCGTGTAGTTTCTTGCTGAAATTGTTGAAATTT GCCATTCTGGTTGGAGTCAATGACTCACCCAGGGAAGATTTGGTGAAGAGAATCAGTTTGAAGTTGCATGAGGCTTCTGTTAAGGATCTACTGGTTCCTG CCCGGCCTCCTCAAAACACATTATATGACGTGGAATTGATTCAGTGCATTGTTAATCGTTATTTGATGCATGAAAAGTATAATCAGGATGAGAAGAACCA GACAAATGGTGACTTTATTTTAGGGCATGAACATGTAACCCTGATGAACCTTGGTAAATTGATTGATGGATATCTAGCTGAAATTGCACACGACCCAAAT CTCACCATCGCCAGCTTCATTGACTTGTCACGGTCAATTCCTGATTCGGCAAGACCAATTCAAGATGGGCTGTACAAAGCCATTGACATCTACCTGAAGG AACATCTCAGTTTGACGAAGGCAGAAAAAAAGAAGATATGCGGGCTAATGGATGTCAAGAAACTGACAATGGAGGCATCAATGCATGCTGCACAGAATGA GCGGCTCCCTCTCCGTGTTGTTGTCCAAGTTCTCTTTTTTGAGCAAGTCAGAGCAGCTTCTGGTGTTCAAGCTCTCAACAACAATGCCCGCGATACTTCA AATTCCACAACAAACACAGATGAAGAGTGGGAGAAGACAGCAGCTGACGATAACAAATCCCTCAAGAAACAAATGAGTAGAATGAAGATAAAAGATGAAG ACTTCCGGAAAAATGGAAAACTGCTGAAGAAAAACAGTAAGAGCACCAAAAGTGGTGTGCAGCTGCTGCCATCTCGATCAAGGAGGATCTTTGATAGATT GTGGGTTGTTGGTAGAGGGCATGTTGAGAACAGAAGCTCGGAGACTTCTGGGAGTTCGCAGAGCCCAACTTCAGTGGCACCTGGTGACACCAAGTCCTTT GGTTCATCTTCAAGACAAAGGAGACACTCCATCTCCTAG
AA sequence Show only first row Show all	>Potri.018G018600.2 pacid=42801537 polypeptide=Potri.018G018600.2.p locus=Potri.018G018600 ID=Potri.018G018600.2.v4.1 annot-version=v4.1 MKFMKLGSKPDAFQADGKSLRYVASELAADVIINVGEVKFNLHKFPLLSKSNRLQKLVSKAGENSDEIDMVDFPGGPKAFEICAKFCYGMIVTLNAYNVV AARCAAEYLEMTEDVDRGNLIFKIEVFLNSSIFRSWKDSIIVLQTTKSLLPWSEDLKIVGRCIDSIASKTSVDPASITWSYTYNRKLSVPDKIVEEGINF REKIESVPKDWWVEDICELDIDLYKRVMITVKSKGRMDGKVIGEALKTYAVRWLPDSFDDSVSDARTWRYKYLVETLICLLPPDKGVGCSCSFLLKLLKF AILVGVNDSPREDLVKRISLKLHEASVKDLLVPARPPQNTLYDVELIQCIVNRYLMHEKYNQDEKNQTNGDFILGHEHVTLMNLGKLIDGYLAEIAHDPN LTIASFIDLSRSIPDSARPIQDGLYKAIDIYLKEHLSLTKAEKKKICGLMDVKKLTMEASMHAAQNERLPLRVVVQVLFFEQVRAASGVQALNNNARDTS NSTTNTDEEWEKTAADDNKSLKKQMSRMKIKDEDFRKNGKLLKKNSKSTKSGVQLLPSRSRRIFDRLWVVGRGHVENRSSETSGSSQSPTSVAPGDTKSF GSSSRQRRHSIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31820		MAB4, ENP, NPY1	NAKED PINS IN YUC MUTANTS 1, M...		Potri.018G018600 [exp]	0	1
AT3G14170			Plant protein of unknown funct...		Potri.003G070200 [exp]	3.87	0.9079
AT1G67510			Leucine-rich repeat protein ki...		Potri.008G176900 [exp]	8.36	0.8870
AT1G19870		IQD32	IQ-domain 32 (.1)		Potri.005G236200 [exp]	8.71	0.9029
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.017G079600 [exp]	11.61	0.8943
AT1G29200			O-fucosyltransferase family pr...		Potri.011G068300 [exp]	18.16	0.8984
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.001G416300 [exp]	18.86	0.8950	ATK2.2
AT3G01810			unknown protein		Potri.001G333200 [exp]	19.44	0.8872
AT1G22060			unknown protein		Potri.008G029800 [exp]	21.07	0.8860
AT2G47010			unknown protein		Potri.019G076900 [exp]	21.63	0.8773
AT5G05980		ATDFB, FPGS1	folylpolyglutamate synthetase ...		Potri.008G060600 [exp]	22.36	0.8254

Compare expression of checked genes

Potri.018G018600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.