Plant FIBer expression Database

Potri.018G018700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10010684
[exp]
800 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0479 PLD PF13091 PLDc_2 PLD-like domain
Representative CDS sequence
>Potri.018G018700.1 pacid=42801638 polypeptide=Potri.018G018700.1.p locus=Potri.018G018700 ID=Potri.018G018700.1.v4.1 annot-version=v4.1
ATGAAACATCCACTTTCAGACATCATCATTTCACTTTCTCTCTGTCTCTTATTATTATTAGCCAATCTTACTCTAACAGAATCATCACCACAATGCAAAG
CATGGCTAGTCCAATCAATCCCTACAGACATGCCACACCTCTCTCCTGTCCCTGGTGTTCTCACCACTGGGGATGTGTTGCTTTGGTTGGCCAAGAATTC
TACTAAGAGTTTGGATGTTATAGCTCAATACTGGCAGTTAGTGGCAAGTCCTGCTGATCCTCGTTCAGGGGATTATGGTTACTCTAAAGAGGAGATGAAG
AGATTTGGCGCTGATCAAGGTTCTGCTGTTTACAACGCCATAGAGGATGCTGCCCTTAGAAATGTTAGTATCAGGCTGTTACAACACTCAGGTGTTTATC
CTGATTTTACCAAAGAACCAACTGACCTTGCTTCAGGAAGGCCAAATGTGAAGAGTGTGACTTTGTTGCTGAGTAAATGGTGGGGGTCAGGCATAATTCA
TACCAAAGTTTGGATATCGGATCGACAAGATGTGTATATTGGATCTGCAAATAATGATTGGAAATCTCTCACTCAGGTTAAGGAGGTTGGAATTTATCTA
GTTGATTGTCCAAAAATAGCAAAAAGTGTTGAAACCTACTTTGGAAACCTATGGAAACTTGCTTCTCTTAATTCATCAGCTTACACCAGAACTGTATCTG
ATCAACAGTGGCAAGTTAATAGAACGGTTCCATGCTGGTCACATTTCATTGATTCTGAAGAAAGATGCAGATCACCTCTTCCTCGTTCCATGAAGGCTCC
CCATACTACAGGCTATCCAACATTATCAGACCCATATATGTTCCATATTCCAATAGAAACTCCCGGGCACAGTTATTCAAATTTGTGGCCTCAACCAAGC
TATTTATCCTTTGCTCCTCCTGAGCTCTCATTTGGCAGGTTCCAGGCTGATGAACAGGCATGGGTTGATACAATTAAATCTGTTGGAACCGGATCCACTG
TTAGGATAAACACTATGGACTGGCTTGGCCAATCCCAATATGTGAAGCCAACAGTTTATTGGTCATCCCTTTCCTCTGTAATCTCTGAGGTTGTCTTCTC
CAAGCACGCAACAGTGAAGTTACTGGTAGCATTCTGGGCTCATTTTATTGACAACACCGAGCAGTATCTGAAGTCTCTTCTCTACTCTAATGTCCTCTGC
TCTTCCTCCAAGTATAACAACTGTTCTGGTAAAGTTGAGATCAAGTACTATTTAGTTCCAGGTTATAACCTGACAGGACCTGCAATTAGCAATGGGACTA
GCACAGGAAACATTTATCCAGGCTTTACGCGGGTTAATCATGGAAAATATGCAGTTAGTGATACACGAGCCCACATTGGCACGAGCAATCTTATATGGGA
TTATTTTTACACAACAGCTGGTGTCAGTTTCGGGACATACAACCCTGCCATTGTTTCACAGCTTCAAGCAATCTTTGATGCTGACTGGAACTCACCATAT
GCTATTCCAGTAGGCGAGCTGGATGAAGCTCATCGTTCTTATTCGAACTGA
AA sequence
>Potri.018G018700.1 pacid=42801638 polypeptide=Potri.018G018700.1.p locus=Potri.018G018700 ID=Potri.018G018700.1.v4.1 annot-version=v4.1
MKHPLSDIIISLSLCLLLLLANLTLTESSPQCKAWLVQSIPTDMPHLSPVPGVLTTGDVLLWLAKNSTKSLDVIAQYWQLVASPADPRSGDYGYSKEEMK
RFGADQGSAVYNAIEDAALRNVSIRLLQHSGVYPDFTKEPTDLASGRPNVKSVTLLLSKWWGSGIIHTKVWISDRQDVYIGSANNDWKSLTQVKEVGIYL
VDCPKIAKSVETYFGNLWKLASLNSSAYTRTVSDQQWQVNRTVPCWSHFIDSEERCRSPLPRSMKAPHTTGYPTLSDPYMFHIPIETPGHSYSNLWPQPS
YLSFAPPELSFGRFQADEQAWVDTIKSVGTGSTVRINTMDWLGQSQYVKPTVYWSSLSSVISEVVFSKHATVKLLVAFWAHFIDNTEQYLKSLLYSNVLC
SSSKYNNCSGKVEIKYYLVPGYNLTGPAISNGTSTGNIYPGFTRVNHGKYAVSDTRAHIGTSNLIWDYFYTTAGVSFGTYNPAIVSQLQAIFDADWNSPY
AIPVGELDEAHRSYSN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G018700
[exp]
0 1
AT4G14030 SBP1 selenium-binding protein 1 (.1... Potri.001G321600
[exp]
1.41 0.7831 SBP.1
AT5G13550 SULTR4;1 sulfate transporter 4.1 (.1) Potri.008G049500
[exp]
2.00 0.7905
AT4G25570 ACYB-2 Cytochrome b561/ferric reducta... Potri.015G143700
[exp]
4.24 0.7631
AT1G04340 HR-like lesion-inducing protei... Potri.008G165100
[exp]
5.65 0.7265
AT4G27870 Vacuolar iron transporter (VIT... Potri.012G004000
[exp]
13.78 0.7545
AT4G09460 MYB ATMYB6, ATMYB8 myb domain protein 6 (.1) Potri.017G128900
[exp]
17.32 0.7563 Pt-MYB.42,MYB181
Potri.006G088664
[exp]
20.17 0.7390
AT5G04020 calmodulin binding (.1) Potri.016G041100
[exp]
21.54 0.7056
AT1G67400 ELMO/CED-12 family protein (.1... Potri.010G060700
[exp]
24.00 0.7437
AT2G41540 GPDHC1 6-phosphogluconate dehydrogena... Potri.006G046900
[exp]
25.33 0.7533

Potri.018G018700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.