Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31810 565 / 0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G60510 429 / 2e-149 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) AT5G65940 327 / 7e-110 CHY1 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) AT2G30660 323 / 3e-108 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT2G30650 320 / 5e-107 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT1G06550 278 / 2e-90 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT4G13360 166 / 6e-47 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) AT3G24360 163 / 7e-46 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2) AT4G16210 63 / 5e-11 ECHIA, E-COAH-2 ENOYL-COA HYDRATASE 2, enoyl-CoA hydratase/isomerase A (.1) AT5G43280 62 / 1e-10 ATDCI1 "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", "delta\(3,5\),delta\(2,4\)-dienoyl-CoA isomerase 1", delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.1), delta(3,5),delta(2,4)-dienoyl-CoA isomerase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G057400 [exp] 485 / 3e-171 AT3G60510 520 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.001G156900 [exp] 454 / 4e-159 AT3G60510 432 / 9e-151 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Potri.014G179000 [exp] 325 / 7e-109 AT5G65940 556 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.010G170200 [exp] 306 / 2e-100 AT5G65940 388 / 6e-133 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.006G264200 [exp] 298 / 4e-99 AT4G31810 243 / 7e-78 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Potri.006G277300 [exp] 299 / 2e-98 AT5G65940 397 / 1e-137 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004200 [exp] 293 / 2e-96 AT5G65940 430 / 2e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004150 [exp] 293 / 2e-96 AT5G65940 428 / 6e-150 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Potri.018G004100 [exp] 290 / 3e-95 AT5G65940 393 / 6e-136 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010685 [exp] 573 / 0 AT4G31810 575 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007422 [exp] 567 / 0 AT4G31810 568 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10028182 [exp] 443 / 1e-155 AT3G60510 453 / 6e-160 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.2), ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.3) Lus10042883 [exp] 399 / 3e-139 AT4G31810 394 / 4e-137 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10038717 [exp] 327 / 2e-107 AT5G65940 565 / 0.0 beta-hydroxyisobutyryl-CoA hydrolase 1 (.1.2.3) Lus10020758 [exp] 267 / 3e-86 AT1G06550 602 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10007334 [exp] 263 / 2e-84 AT1G06550 595 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10019396 [exp] 166 / 7e-47 AT4G13360 607 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10043253 [exp] 141 / 3e-37 AT4G13360 565 / 0.0 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1) Lus10010994 [exp] 77 / 3e-15 AT4G16800 351 / 2e-121 ATP-dependent caseinolytic (Clp) protease/crotonase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0127 [poplar] [flax] ClpP_crotonase PF00378 [poplar] [flax] ECH_1 Enoyl-CoA hydratase/isomerase
Representative CDS sequence Show only first row Show all	>Potri.018G018800.1 pacid=42801389 polypeptide=Potri.018G018800.1.p locus=Potri.018G018800 ID=Potri.018G018800.1.v4.1 annot-version=v4.1 ATGATGCAGAGATTCAAAGGATTGATAAAGTTAAAGCAAGCTAGAAATGGGCTTCTTTCTTATCAGAGAAACTTCTCTGCTTTACCTTACGATGCTCAAT ATGATGATCCTCAAGACCAGGTTTTGGTTGAAGGAAGAGCGAAATCAAGAGCAGCCATTCTTAATAGACCAGCTTCTCGCAATGCTCTCACAATTCCAAT GGTGGCTCGGTTGAAGAGACTGTATGAATCATGGGAAGAAAACCATGATATTGGATTTGTCTTGATGAAGGGTAGCGGCAAGGCTTTCTGTTCCGGTTCA GATGTCGTTTCCCTTTGTGAGTTGTTAAATGAAGGAAAGATGGAAGAATGCAAAACATATTTCCAGACATTGTATAAGTTTGTCTACCTACAAGCAACAT ATTTGAAGCCAAATGTGGCCATCTTGGATGGTTTCACCATGGGATCTGGGGCTGGAATTGCGGTGCCAGGAATGTTTCGTGTGGCAACTAATAAAACTGT TTTTGCTCATCCAGAGGCTCAAATAGGTTTCCATCCTGATGCAGGGGCCTCCTTTTATCTTTCTCGCCTACCTGGTTACTTAGGGGAATACTTGGCTCTA ACGGGAGACAAGCTTAATGGTGTAGAAATGATTGCTTGTGGCCTTGCTTCTCACTATGCATTACATGAGAGACTTGATTTGATTGAAGAACGTCTCGGTA AACTGATCACAGATGAGGCTACTGTCATAGAGACTTCTCTTGCACAATATGGTGACCTTGTCTATCCAGATAAGACAAGCGTCCTTTACAAGATCGAGAC AATTGATAAATGTTTCAGCCATGATACAGTTGAGGAAATTGTTGATGCACTGGAAAATGAGGCAGCCAACTCTTATAATGAGTGGTGTAAAAATGCCATC GGCAAAATAAAAGAAGCCTCACCACTGAGCTTAAAAGTTACATTGCATTCGATACGAGAAGGTAGATTTCAATCTCTCGATCAGTGTCTTGCTCGTGAAT ATCGAATGTCACTCACTGGAATGTCCAAACGAGTGTCTAATGATTTCTGTGAGGGTGTTCGTGCTCGGCTAGTAGATAAGGATTTTGCTCCGAAGTGGGA ACCTCCAAGTTTAGAAGAAGTAAGCAAAGACATGGTGGATAGCTATTTCTCCCCACTTGGGGAGCTCGAACCAGAGTTGGAGCTGCCAACAGCTTTGCGA GAACCTTACATCTGA
AA sequence Show only first row Show all	>Potri.018G018800.1 pacid=42801389 polypeptide=Potri.018G018800.1.p locus=Potri.018G018800 ID=Potri.018G018800.1.v4.1 annot-version=v4.1 MMQRFKGLIKLKQARNGLLSYQRNFSALPYDAQYDDPQDQVLVEGRAKSRAAILNRPASRNALTIPMVARLKRLYESWEENHDIGFVLMKGSGKAFCSGS DVVSLCELLNEGKMEECKTYFQTLYKFVYLQATYLKPNVAILDGFTMGSGAGIAVPGMFRVATNKTVFAHPEAQIGFHPDAGASFYLSRLPGYLGEYLAL TGDKLNGVEMIACGLASHYALHERLDLIEERLGKLITDEATVIETSLAQYGDLVYPDKTSVLYKIETIDKCFSHDTVEEIVDALENEAANSYNEWCKNAI GKIKEASPLSLKVTLHSIREGRFQSLDQCLAREYRMSLTGMSKRVSNDFCEGVRARLVDKDFAPKWEPPSLEEVSKDMVDSYFSPLGELEPELELPTALR EPYI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31810			ATP-dependent caseinolytic (Cl...		Potri.018G018800 [exp]	0	1
AT5G27400			S-adenosyl-L-methionine-depend...		Potri.005G039000 [exp]	1.00	0.8900
AT1G14300			ARM repeat superfamily protein...		Potri.013G124050 [exp]	2.23	0.8455
AT1G60770			Tetratricopeptide repeat (TPR)...		Potri.006G157400 [exp]	6.32	0.8309
AT1G25260			Ribosomal protein L10 family p...		Potri.011G156300 [exp]	9.79	0.8461
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Potri.015G130000 [exp]	11.61	0.8508	RPS13.4
AT5G57280		RID2	root initiation defective 2, S...		Potri.018G049800 [exp]	12.40	0.8254
AT5G45775			Ribosomal L5P family protein (...		Potri.006G181501 [exp]	13.41	0.8289
AT2G39390			Ribosomal L29 family protein ...		Potri.010G212300 [exp]	14.14	0.8622	RPL35.2
AT3G13674			unknown protein		Potri.018G082800 [exp]	17.74	0.8248
AT1G05070			Protein of unknown function (D...		Potri.005G038000 [exp]	18.49	0.7679

Compare expression of checked genes

Potri.018G018800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.