Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66360 436 / 6e-153 DIM1B adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) AT2G47420 267 / 5e-87 DIM1A adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) AT1G01860 105 / 2e-25 PFC1 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) AT3G23510 45 / 7e-05 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23480 44 / 0.0002 Cyclopropane-fatty-acyl-phospholipid synthase (.1.2) AT3G23530 44 / 0.0002 Cyclopropane-fatty-acyl-phospholipid synthase (.1) AT3G23470 43 / 0.0003 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G121200 [exp] 253 / 3e-81 AT2G47420 526 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Potri.006G264101 [exp] 160 / 1e-48 AT5G66360 120 / 1e-33 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Potri.014G077100 [exp] 113 / 4e-28 AT1G01860 437 / 1e-154 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Potri.010G067800 [exp] 47 / 2e-05 AT3G23510 650 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067700 [exp] 45 / 7e-05 AT3G23530 652 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067900 [exp] 45 / 9e-05 AT3G23530 1392 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.008G170300 [exp] 44 / 0.0002 AT3G23510 1408 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067600 [exp] 44 / 0.0002 AT3G23510 647 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Potri.010G067567 [exp] 43 / 0.0002 AT3G23510 640 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041797 [exp] 414 / 3e-144 AT5G66360 436 / 8e-153 adenosine dimethyl transferase 1B, Ribosomal RNA adenine dimethylase family protein (.1.2) Lus10034669 [exp] 256 / 1e-82 AT2G47420 527 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10017864 [exp] 254 / 6e-82 AT2G47420 529 / 0.0 adenosine dimethyl transferase 1A, Ribosomal RNA adenine dimethylase family protein (.1) Lus10009319 [exp] 113 / 5e-27 AT1G01860 417 / 4e-137 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10015847 [exp] 67 / 7e-13 AT1G01860 216 / 6e-70 PALEFACE 1, Ribosomal RNA adenine dimethylase family protein (.1) Lus10011784 [exp] 52 / 6e-07 AT3G23530 1253 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1) Lus10023741 [exp] 49 / 8e-06 AT3G23530 1294 / 0.0 Cyclopropane-fatty-acyl-phospholipid synthase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF13847 [poplar] [flax] Methyltransf_31 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.018G018900.1 pacid=42800413 polypeptide=Potri.018G018900.1.p locus=Potri.018G018900 ID=Potri.018G018900.1.v4.1 annot-version=v4.1 ATGAATACTCAGTTGAAGAAGAGAAATCTAATCCAATTCTACCTTATCCAATCCATTCTCAGACAAAACTCTCTCCGACAACTTCGTACCAAGCCAACCC ATCATTACAATGACAAATACAGAACTAGAAACACAAAAGAAGACAAGCAACAAGACGACTTATTCTTGTATAAAAGCAAAGGCCAGCACTTGCTCACTAA CCAGAGGATTCTAGACTCCATAGTTAGAAAATCTTCAATAAACCCAACCGACACTGTCCTTGAAATTGGACCAGGAACTGGAAACCTCACTCTTAAGCTT CTTGATGTTGCTTCGAAGGTTGTTGCTGTTGAAATTGATAAAAGGATGGTTGGGGTTCTTAATAAACGTGTGAAGGAGCATGGATTTGAAGATAAACTGA GTGTTATTCGAGAGGATGCATTGAAGGCTGAGTTTCCCAAATTTGATCTTGTTGTGGCCAACATTCCTTATGGGATATCTTCGCCTCTCGTGGCTAAATT GGTGTATGGGGCGAATACATTTCGAAGTGCCACACTTCTTCTTCAGAAAGAATTTGCACGGCGGTTGTTGGCAAAGCCTGGAGATTCTGAGTTTAATAGA TTGGCTGTGAATGTGAAGTTGGTAGCAGATGTGGAGTTTGTGATGAATGTAAGCAAGAGGGAATTTTTCCCTGTTCCAAAAGTTGATTCTTCTGTGGTTA TCATTCGGCCAAAAGATCGAATTCCTGATGTGAATCTTGATGAATGGTGGGCATTCACGAAAAATTGTTTTGGGAAGAAGAATAAGACTTTGGGGGCAAC ATTTAAGCAGAAGAAGAAGGTGATAGAACTATTCAGATTATCGAAAATGACGAGCTCTAATGGAGAAGAAATTAATAGGAACCAGTATGTTTGTGCGGAT GATGATGGGGACAATGAGGAGGAGAGTGATGGAGAAGAGTGCCATTCATCTTCTTGCGCAGATAGAGAGTTGCTTTTGTTCAAGGAGAAGATCATTGAGG TTCTAAAAGCTGGTAGTTTTGAAGATAAGAGACCTTCAAAGCTGTGTAATGATGAGTTACTGTACTTACTTTCCATGCTCAATCAATCTGGAATATACTT TCATGAGCAAACAAAGCCAAGGAATGTAGGTAATGTAGCATTTGCTGCTGCTTACAGTTGA
AA sequence Show only first row Show all	>Potri.018G018900.1 pacid=42800413 polypeptide=Potri.018G018900.1.p locus=Potri.018G018900 ID=Potri.018G018900.1.v4.1 annot-version=v4.1 MNTQLKKRNLIQFYLIQSILRQNSLRQLRTKPTHHYNDKYRTRNTKEDKQQDDLFLYKSKGQHLLTNQRILDSIVRKSSINPTDTVLEIGPGTGNLTLKL LDVASKVVAVEIDKRMVGVLNKRVKEHGFEDKLSVIREDALKAEFPKFDLVVANIPYGISSPLVAKLVYGANTFRSATLLLQKEFARRLLAKPGDSEFNR LAVNVKLVADVEFVMNVSKREFFPVPKVDSSVVIIRPKDRIPDVNLDEWWAFTKNCFGKKNKTLGATFKQKKKVIELFRLSKMTSSNGEEINRNQYVCAD DDGDNEEESDGEECHSSSCADRELLLFKEKIIEVLKAGSFEDKRPSKLCNDELLYLLSMLNQSGIYFHEQTKPRNVGNVAFAAAYS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66360		DIM1B	adenosine dimethyl transferase...		Potri.018G018900 [exp]	0	1
AT5G20070		ATNUDX19, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.006G154200 [exp]	1.73	0.8963
AT5G54930			AT hook motif-containing prote...		Potri.011G138700 [exp]	1.73	0.8979
AT4G35910			Adenine nucleotide alpha hydro...		Potri.006G051300 [exp]	2.00	0.8909
AT3G22430			unknown protein		Potri.010G087400 [exp]	2.00	0.8972
AT1G77850	ARF	ARF17	auxin response factor 17 (.1)		Potri.002G089900 [exp]	3.87	0.8853
AT1G17640			RNA-binding (RRM/RBD/RNP motif...		Potri.003G040900 [exp]	6.32	0.8554
AT1G11240			unknown protein		Potri.011G043400 [exp]	7.93	0.8246
					Potri.013G057832 [exp]	11.18	0.8219
					Potri.007G125700 [exp]	11.74	0.8233
AT1G70180			Sterile alpha motif (SAM) doma...		Potri.010G036500 [exp]	12.04	0.8199

Compare expression of checked genes

Potri.018G018900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.