Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10870 303 / 7e-104 ATCM2 chorismate mutase 2 (.1) AT1G69370 249 / 6e-82 CM-3, CM3 chorismate mutase 3 (.1) AT3G29200 244 / 9e-80 ATCM1, CM1 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G088700 [exp] 262 / 8e-87 AT3G29200 352 / 2e-121 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Potri.010G162300 [exp] 251 / 2e-82 AT1G69370 370 / 6e-129 chorismate mutase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007444 [exp] 305 / 3e-104 AT5G10870 310 / 1e-106 chorismate mutase 2 (.1) Lus10015378 [exp] 241 / 2e-74 AT3G29185 474 / 2e-162 Domain of unknown function (DUF3598) (.1), Domain of unknown function (DUF3598) (.2) Lus10032998 [exp] 230 / 2e-74 AT3G29200 359 / 2e-124 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10019795 [exp] 201 / 2e-64 AT3G29200 288 / 3e-98 ARABIDOPSIS THALIANA CHORISMATE MUTASE 1, chorismate mutase 1 (.1) Lus10014114 [exp] 120 / 3e-33 AT1G69370 199 / 7e-64 chorismate mutase 3 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G019250.1 pacid=42801919 polypeptide=Potri.018G019250.1.p locus=Potri.018G019250 ID=Potri.018G019250.1.v4.1 annot-version=v4.1 ATGGCTTTTCTTCATGTGCTGATTCTTGTTATCTTGTCTTTGAATAGATATAAAAATAACAAGGCAATGGCAGAAGGAAGTTCTGGGTCTGAGTTTACCC TTGATTCAATAAGAAAGTCTTTGATAAGACAAGAGGATACTATTGTTTTTTGTTTGATGGAGAGAGCAAGGTTTCCTATGAATTCTGCTTTGTATAATCA GAGTTTGGATTTGGTTCCTGGGTTTTCCGGTCCTTTGGTGGATTTCATTGTTCAGGAGACAGAGGCAGTTCAAGCTAAGGCTGGGAGGTATGTGAATCCA GAAGAAAATCCCTTCTTCCCAGATAATTTACCACCTTCATTGGTTCCAAACTACAACTATTCTCAGGTTTTGCATTCTGGAGGTGCTTCTATTAACATAA ACAAGGCTATATGGGATATGTATCTAAACCAACTACTTCCTTTGTTTGTTGTTGCGGGTGATGATGGTAACTATGCGTCAACTGCTGCCAGTGATCTTAG CTGCTTACAGGCCCTCTCTAGAAGAATCCATTACGGGAAGTTTGTGGCTGAGATTAAATTCAGGGATGCTCCACACGACTATGAACCTCCAATTCGTGCC AAGGACGCAGATGAGCTGATGAAGTTGTTGACGGATGAGAGAGTAGAGAAGATGGTTAAGAAGAGGGTTGAGAAAAAGGCGATTGTTTTTGGACAAGATG TGAGCGGCAGCAACAATGCTGTCAGTAAACATTACAAGGTTGATCCTTCTGTAGTAGCTCGCCTCTACGACGAATGGGTAATCCCTCTCACCAAGCGGGT TGAAGTTGAGTATCTCATCCGCCGATTGGATTGA
AA sequence Show only first row Show all	>Potri.018G019250.1 pacid=42801919 polypeptide=Potri.018G019250.1.p locus=Potri.018G019250 ID=Potri.018G019250.1.v4.1 annot-version=v4.1 MAFLHVLILVILSLNRYKNNKAMAEGSSGSEFTLDSIRKSLIRQEDTIVFCLMERARFPMNSALYNQSLDLVPGFSGPLVDFIVQETEAVQAKAGRYVNP EENPFFPDNLPPSLVPNYNYSQVLHSGGASININKAIWDMYLNQLLPLFVVAGDDGNYASTAASDLSCLQALSRRIHYGKFVAEIKFRDAPHDYEPPIRA KDADELMKLLTDERVEKMVKKRVEKKAIVFGQDVSGSNNAVSKHYKVDPSVVARLYDEWVIPLTKRVEVEYLIRRLD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Potri.018G019250 [exp]	0	1
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	8.00	0.7809
AT3G10260			Reticulon family protein (.1.2...		Potri.002G055600 [exp]	8.94	0.7974
AT3G12570		FYD	FYD (.1.2.3.4)		Potri.008G054100 [exp]	9.64	0.7812
AT4G05320		UBQ10	polyubiquitin 10 (.1.2.3.4.5.6...		Potri.001G418500 [exp]	20.71	0.7133
AT4G13510		ATAMT1;1, AMT1;...	ARABIDOPSIS THALIANA AMMONIUM ...		Potri.010G063500 [exp]	22.44	0.7470	Pt-AMT1.4,1
AT4G29905			unknown protein		Potri.008G007932 [exp]	23.81	0.6948
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024600 [exp]	28.98	0.7378	HSP1.1
AT1G04260		PRA1.D, MPIP7, ...	PRENYLATED RAB ACCEPTOR 1.D, C...		Potri.010G077700 [exp]	29.69	0.7485	Pt-MPI7.1
AT2G02360		ATPP2-B10	phloem protein 2-B10 (.1)		Potri.001G050100 [exp]	37.30	0.7365
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.002G175800 [exp]	38.06	0.6920

Compare expression of checked genes

Potri.018G019250 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.