Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25050 636 / 0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) AT3G32400 581 / 0 Actin-binding FH2/DRF autoregulatory protein (.1) AT5G58160 572 / 4e-180 actin binding (.1) AT1G31810 531 / 6e-166 AFH14 Formin Homology 14 (.1) AT5G07740 530 / 1e-161 actin binding (.1) AT5G07770 431 / 4e-134 Actin-binding FH2 protein (.1.2) AT5G07650 406 / 4e-124 Actin-binding FH2 protein (.1) AT5G07780 380 / 9e-119 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G07760 378 / 2e-113 formin homology 2 domain-containing protein / FH2 domain-containing protein (.1) AT1G42980 216 / 2e-62 Actin-binding FH2 (formin homology 2) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263700 [exp] 1184 / 0 AT2G25050 627 / 0.0 Actin-binding FH2 (Formin Homology) protein (.1), Actin-binding FH2 (Formin Homology) protein (.2) Potri.006G185601 [exp] 618 / 0 AT5G58160 603 / 0.0 actin binding (.1) Potri.018G108000 [exp] 617 / 0 AT5G58160 600 / 0.0 actin binding (.1) Potri.006G185501 [exp] 599 / 0 AT5G58160 598 / 0.0 actin binding (.1) Potri.003G103800 [exp] 578 / 0 AT1G31810 718 / 0.0 Formin Homology 14 (.1) Potri.012G067900 [exp] 564 / 2e-176 AT5G07740 727 / 0.0 actin binding (.1) Potri.015G061001 [exp] 548 / 7e-170 AT5G07740 722 / 0.0 actin binding (.1) Potri.007G054900 [exp] 130 / 2e-30 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 127 / 2e-29 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007447 [exp] 641 / 0 AT5G58160 604 / 0.0 actin binding (.1) Lus10024450 [exp] 626 / 0 AT5G58160 600 / 0.0 actin binding (.1) Lus10035830 [exp] 603 / 0 AT5G58160 619 / 0.0 actin binding (.1) Lus10036612 [exp] 601 / 0 AT5G58160 608 / 0.0 actin binding (.1) Lus10015724 [exp] 532 / 2e-166 AT5G07740 723 / 0.0 actin binding (.1) Lus10003956 [exp] 528 / 4e-164 AT1G31810 731 / 0.0 Formin Homology 14 (.1) Lus10023804 [exp] 527 / 8e-164 AT1G31810 615 / 0.0 Formin Homology 14 (.1) Lus10003482 [exp] 504 / 1e-154 AT5G07740 714 / 0.0 actin binding (.1) Lus10017556 [exp] 288 / 5e-87 AT5G07740 392 / 1e-124 actin binding (.1) Lus10015725 [exp] 197 / 2e-57 AT5G07740 282 / 6e-88 actin binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.018G019600.1 pacid=42800637 polypeptide=Potri.018G019600.1.p locus=Potri.018G019600 ID=Potri.018G019600.1.v4.1 annot-version=v4.1 ATGGCTTTGTTTAGAAAGTTCTTCTATAGAAAACCACCTGATGGGCTGTTGGAGATCTCTGAAAGGGTTTACGTCTTTGATTGCTGCTATTGTATGGATA CTTTTGAAGAGGAAGAATATAAAGTGTACATACGAGGCATAGTGGGTAAGCTTCGTAACCATTTGCCTGATGCTTCATTTATGGTGTTTAATTTCCAAGA AGGTGAAAATGAAAGTCAGATTGGTAGTGTATTGTCTGAATTTGACATGACTGTGATGGACTATCCTCGGCACTATGAAAGTTTCCCCTTGCTCTCAATG GAGATGATTCATCATTCCTTGCGGTCTAGCGAAAGCTGGCTGTCACTTGGGCAACAAAATGTGGTCTTGATGCATTGCGAACGAGGGGGGTGGCCGGTTC TGGCTTTCATGCTAGCTGCATTATTGCTATACGGGAAGCAGTTCACTGGTGAGCAGAGAACCTTAGACATGATTTACAAGCAAGGGCCTCAAGAGCTTTT ACACCTGATGTCCCCTATTAATCCATTACCTTCGCAATTGAGGTACTTACAGTATGTATCAAGGAGGAACATGGGAACACAATGGCCTCCGCTGGATAGA GCACTTACATTGGATTGCATTATTCTTAGAGTCATTCCTTGTATGGATACAGAGGGGGGTTGCCAGCCAATATTTAGGATACATGGACAAGACCCTTTTA TGGTTGTTGATAGGACTCCTAAAGTTCTGTTCTCAACACCAAAAAGGAGCAGATTTGTCCAGCATTACAAGCAGGCAGATTGTGAATTGGTTAAAATCGA CATTAATTGTCATATCCAAGGTGATGTTGTCATGGAGTGTATTAACTTGGACAGTGATCACGAGAGGGAACAGATGATGTTTCGGGTCATGTTTAATACT TCCTTTATAAGTTCAAATATCTTGATGCTTAATCGTGATGAAATCGACACCTTATGGGATGCAAAGGATCAATTTCCCAAGGACTTCAGAGCAGAGGTTC TTTTCTCAGAGATGGATTCTAGTACTCCTATTGGTGCAATTGATTTGCCTGGTTTAGAAGAGAAAGATGGCATACCTGTGGAAGTGTTTCCCAGAGTTCA CGAGATTTTCAGCAATATGGACTGGCCAGATACAAAAACTGATGTAGCACAAAATATGCACCATCATATCATGGAACCCCAAGAAAATTTGGACAGCTCT CCCCAGAGGGCAGAAGGAGGAAGTGTACTGATGGAATCAACCTTTGTCAGAGTTCAAGAGAAACCGAAACTAAATGAATCAGAAAACAAGACTCCAAGTC CCACTTCCATTACCCTGGTGAAACAATCCACTCTCTCTTTCAAACCATTTTCAGATACAAATTCAGTAAGAGAGGAGGCTGAACCCCAAGAACTAAAGGT TGCCCTCCAATCTATGCCCTCTATTAAATCATCTCCTGATGCAAATTCAGCTAGGGAGAAGGTAGAACCCCAAGAACTGAAGGTCGCTTGCCAATCTACG CTCTCTATTAAGCCATCTTTAGATGCAATTTCAACTCAAAAGAAGGTTGAGCCACAAGAGCTCCAGGTTGCTCTCCAATGGCCAGCTCAATCTAAGATCA TATCACAGCGAGTACCCCAGAGATCACTCTGTTCTCCAGTTTCCTACGGCAATAACTTACAGGGCTTACCTGTGCCTATGTCAAGATACCACAGTGCACC CTCTGCCCTAGGAATTACAGCTTTGTTGCATGATCATGCTGTATCTAAAGGCGAAGAAGTCGTGCGTCCAGTGACATTATCTCTGCCTTCCTCAGCTATT TCATCTCCAATCACAGGTGTGCTTAAACCTCCACCACTCAATAATGTGTCTGCTCCAAGGACACCACCACTTCCTACACCATTGCAATCTTCATTTGAAG CTCCTAAAACAACAGAAAAGCCTTCTCCAACATGTCATATTCCTCCAGCTATTCCTCAACCTATTTCAATTTCTTCTCCCGTCACAGATCCACCCAAACC TGCACAACTCAATCATGTGGCTGCTCCGGGGACACCACCATGCCCTCTTAACCCATTGCAATCATCAATTGAAGCTCCCAAAACTACAAATTTTTTTTCC GGTGCTTGTCATATTCCTCCTCAATCCAGAGGAACAGATTCTCTACTTAATCAACATCCTCAACCAACATCAGACAGTATCCACTCACCATTGTTTCCAT CTCTTCTCTCTTCTCTTTCTTATTCTTCTTCTCCTGTTATCAAGAGTTCATCTTCAGCTCCCCCAGCTCCTCCTCCACCCCCTTCTTTTTCAAAGGCATC CCCATCTCCTTTCACCAAGAAATCATTCCCAACTCCCCCTCCCCCTCCCCCTCCCCCTCCCCTGCCTCCTTTTACAGCAGCACCTCCATCTTCCACTAAC AGGAACTCGTATTCAGCTCCCCCTCCTCTACCTCCTGGAATGGCTTCAAAGGTTGCCAGCTCAGGTACTGCACAGTCTGGGAAGAACTTGGCTGTTGTGC CTGGACCACCACCACCACCACCTCCTCCTCCTCCTCCTCTACATCCTGGATCTACCCTGGGCCCTGCAAATGCTCCTTCAGTGCCACCACCACCACCTCC CCCTCCTAGTTCTGTTGCAAAAGCTTCTTCATTTAATAATGCCGCACATATTCCTCCCGTGCCACCTCCTGATCCTTTGACTAAAGGGTTGTCAAGAACT AGTAGCGTCTCCTCACCTCCTCTACATTCTGGATCAGCCCTGGGCCCTGCTAATGCTCCTTCAGTGCCACCACCACCCCCTCCTTCTAGTTCTGTTGCTA AAACTTCTTCATTTAATAATGTCGCGCATATTCCTCCTGTGCCACCTCCTCCTGCCCCTTTGACTAAAGGGTTGTCAAGAACTAGCAGTGTCTCCTCACC ATCTCATGCTGGAGTTAGAAATGGAAATGTGCCTTCAGTTCCTGGACCACCATCTGGTGCTCCATTTAGTGCAAAGGGGCAGGGCATGTTACGTATAAAT GCAAAAAATCAACCCAGAAAAGCCAACCTGAAGCCTTATCATTGGTTAAAATTAACCAGGGCCATGTCAGGAAGTTTGTGGGCTGAGGCACAAAAAGCTG ATGAAGCTTCCAAGGCTCCTGAGTTTGACATATCAGAACTTGAGACTCTTTTCTCAGCGGCTGCTCCAAATTATGATTGTGGGAGCACAGCAGGGAAATC AAATCGACGCACCTTGGGACATAAATCTGATAAAATCCAGCTGATTGAACTGAGACGGGCATATAATTGTGAGATCATGCTTTCAAAGGTTAAAATTCCT CTGCCAGACCTGATGAGTTCAGTTCTTGCTTTGGATGATACAGCATTGGATATTGATCAGGTTGATAGCCTTATTAAGTTTTGTCCAACAAAAGAGGAGA TGGAATTACTCAAGGGTTATAATGGAGATAAAGAGAACTTGGGAAAATGTGAACAGTTTTTCTTGGAAATGATGAAAGTGCCACGTGCAGAGTCAAAGCT AAGAGTTTTTTCATTTAAGATACAATTCCAATCCCAGGTTTCTGATCTCAGAGGCAATTTGAATGTTATAAATTCAGCTTCTGAAGAGATCAGGAGCTCA GCGAAGTTGAAAAGGATCATGCAGACTATTCTTTCCCTTGGTAATGCTCTCAACCATGGTACTGCAAGGGGTTCTGCTGTTGGATTTCGATTGGATAGTC TCCTCAAACTCACTGATACACGAGCTCGAAACAACAAGATAACTCTCATGCATTATCTTTGTAAGGTACTGGCTGAAAAGCTTCCAGAACTGCTAGATTT TTCGAAGGATCTTGTGAATTTGGAGGCTGCAACAAAAATACAATTGAAATATTTGGCAGAGGAAATGCAAGCTGTTAGTAAAGGACTTGAAAAAGTTATG CAGGAATTGACTGCTTCAGAGAATGATGGTTTGGTCTCAGAAAGTTTTTGCAAGAATCTCAAGGTTTTTCTTGCTTTTGCTGAAAGTGAAGTGAGGTCTT TGGCTTCCCTTTATTCCTCCGTGGGTAGAAATGCAGATGCACTGGCTTTTTATTTTGGGGAAGATCCGGCACGTTGCCCATTTGAGCAAGTTGTGTCCAC TCTGCTCAATTTTGTGAGGATGTTCGTCCGAGCACATGATGAAAACAAAAAACAACTTGAATTGGGAAAGAAAAAAGCAGAAAAGGATGCTCAAAATGAG AAGTCCATGATGGCTTCTCCGAGAAAGCTGTCTGAAAACTTGGTACAGACACCTATCAAAAGTGGGATCTTCAAATGA
AA sequence Show only first row Show all	>Potri.018G019600.1 pacid=42800637 polypeptide=Potri.018G019600.1.p locus=Potri.018G019600 ID=Potri.018G019600.1.v4.1 annot-version=v4.1 MALFRKFFYRKPPDGLLEISERVYVFDCCYCMDTFEEEEYKVYIRGIVGKLRNHLPDASFMVFNFQEGENESQIGSVLSEFDMTVMDYPRHYESFPLLSM EMIHHSLRSSESWLSLGQQNVVLMHCERGGWPVLAFMLAALLLYGKQFTGEQRTLDMIYKQGPQELLHLMSPINPLPSQLRYLQYVSRRNMGTQWPPLDR ALTLDCIILRVIPCMDTEGGCQPIFRIHGQDPFMVVDRTPKVLFSTPKRSRFVQHYKQADCELVKIDINCHIQGDVVMECINLDSDHEREQMMFRVMFNT SFISSNILMLNRDEIDTLWDAKDQFPKDFRAEVLFSEMDSSTPIGAIDLPGLEEKDGIPVEVFPRVHEIFSNMDWPDTKTDVAQNMHHHIMEPQENLDSS PQRAEGGSVLMESTFVRVQEKPKLNESENKTPSPTSITLVKQSTLSFKPFSDTNSVREEAEPQELKVALQSMPSIKSSPDANSAREKVEPQELKVACQST LSIKPSLDAISTQKKVEPQELQVALQWPAQSKIISQRVPQRSLCSPVSYGNNLQGLPVPMSRYHSAPSALGITALLHDHAVSKGEEVVRPVTLSLPSSAI SSPITGVLKPPPLNNVSAPRTPPLPTPLQSSFEAPKTTEKPSPTCHIPPAIPQPISISSPVTDPPKPAQLNHVAAPGTPPCPLNPLQSSIEAPKTTNFFS GACHIPPQSRGTDSLLNQHPQPTSDSIHSPLFPSLLSSLSYSSSPVIKSSSSAPPAPPPPPSFSKASPSPFTKKSFPTPPPPPPPPPLPPFTAAPPSSTN RNSYSAPPPLPPGMASKVASSGTAQSGKNLAVVPGPPPPPPPPPPPLHPGSTLGPANAPSVPPPPPPPPSSVAKASSFNNAAHIPPVPPPDPLTKGLSRT SSVSSPPLHSGSALGPANAPSVPPPPPPSSSVAKTSSFNNVAHIPPVPPPPAPLTKGLSRTSSVSSPSHAGVRNGNVPSVPGPPSGAPFSAKGQGMLRIN AKNQPRKANLKPYHWLKLTRAMSGSLWAEAQKADEASKAPEFDISELETLFSAAAPNYDCGSTAGKSNRRTLGHKSDKIQLIELRRAYNCEIMLSKVKIP LPDLMSSVLALDDTALDIDQVDSLIKFCPTKEEMELLKGYNGDKENLGKCEQFFLEMMKVPRAESKLRVFSFKIQFQSQVSDLRGNLNVINSASEEIRSS AKLKRIMQTILSLGNALNHGTARGSAVGFRLDSLLKLTDTRARNNKITLMHYLCKVLAEKLPELLDFSKDLVNLEAATKIQLKYLAEEMQAVSKGLEKVM QELTASENDGLVSESFCKNLKVFLAFAESEVRSLASLYSSVGRNADALAFYFGEDPARCPFEQVVSTLLNFVRMFVRAHDENKKQLELGKKKAEKDAQNE KSMMASPRKLSENLVQTPIKSGIFK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25050			Actin-binding FH2 (Formin Homo...		Potri.018G019600 [exp]	0	1
AT4G14368			Regulator of chromosome conden...		Potri.008G167500 [exp]	1.41	0.8634
AT4G19020		CMT2	chromomethylase 2 (.1)		Potri.003G100000 [exp]	1.41	0.8900
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Potri.002G254300 [exp]	7.74	0.8449	XIB.1
AT3G54650		FBL17	RNI-like superfamily protein (...		Potri.005G218400 [exp]	11.31	0.8477
AT1G09840		AtHIR1, ATSK41	hypersensitive induced reactio...		Potri.003G005900 [exp]	13.41	0.8472
AT3G11130			Clathrin, heavy chain (.1)		Potri.008G070600 [exp]	13.96	0.8259
AT4G11450			Protein of unknown function (D...		Potri.001G104200 [exp]	14.49	0.8266
AT1G14710			hydroxyproline-rich glycoprote...		Potri.010G102100 [exp]	15.19	0.8426
AT5G18820		Cpn60alpha2, EM...	embryo defective 3007, chapero...		Potri.015G123200 [exp]	15.55	0.8297
AT5G16210			HEAT repeat-containing protein...		Potri.004G095900 [exp]	21.02	0.8268

Compare expression of checked genes

Potri.018G019600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.