Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80840 137 / 1e-38 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT4G31800 133 / 6e-37 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G25000 119 / 5e-32 WRKY ATWRKY60, WRKY60 WRKY DNA-binding protein 60 (.1) AT4G22070 105 / 1e-25 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G62300 105 / 2e-25 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT4G04450 103 / 5e-25 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1) AT1G68150 101 / 9e-25 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT4G01720 102 / 1e-24 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G18860 100 / 4e-24 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT5G15130 100 / 9e-24 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G044500 [exp] 167 / 6e-50 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.003G182200 [exp] 162 / 5e-48 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.018G019800 [exp] 141 / 5e-40 AT1G80840 263 / 7e-87 WRKY DNA-binding protein 40 (.1) Potri.006G263600 [exp] 135 / 9e-38 AT4G31800 244 / 2e-79 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) Potri.002G228400 [exp] 108 / 1e-26 AT1G62300 337 / 2e-108 WRKY family transcription factor (.1) Potri.014G155100 [exp] 108 / 1e-26 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.014G111900 [exp] 108 / 2e-26 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.002G186600 [exp] 106 / 4e-26 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.017G079500 [exp] 103 / 8e-25 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041660 [exp] 140 / 3e-39 AT1G80840 279 / 1e-92 WRKY DNA-binding protein 40 (.1) Lus10024074 [exp] 140 / 4e-39 AT1G80840 291 / 3e-97 WRKY DNA-binding protein 40 (.1) Lus10026082 [exp] 140 / 4e-39 AT1G80840 286 / 2e-95 WRKY DNA-binding protein 40 (.1) Lus10002309 [exp] 137 / 3e-38 AT1G80840 293 / 2e-98 WRKY DNA-binding protein 40 (.1) Lus10021554 [exp] 108 / 2e-26 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10035286 [exp] 108 / 2e-26 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1) Lus10015546 [exp] 105 / 3e-26 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10022959 [exp] 106 / 7e-26 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10023615 [exp] 104 / 4e-25 AT5G15130 244 / 1e-73 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10036725 [exp] 103 / 4e-25 AT5G15130 227 / 6e-68 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G019700.1 pacid=42801371 polypeptide=Potri.018G019700.1.p locus=Potri.018G019700 ID=Potri.018G019700.1.v4.1 annot-version=v4.1 ATGGATGTCTTTCCCTCTTGCAAAGAAAAGGTGGAAGCTCTTCAATTCGAGTTGGAACACAGGCAGAAAGAGAATGAAAGTCTTAGATTTATGCTTGGAG TTATGACCAGAAGATTCAGCATTCTTCAAGCCGAGATTCAAGAAACCGAAGAACATCAACAAAAGACAGCTAGCAACTTAGCGGATGGAGATCAAGCTTG TCATGAAATCCTTGACTCGAACAAGAGAGCAAGATTTGAAGTTCCCATAACCAAGGCATCGAGAATCTTGGTGAGAAGTCACTCCAATGACAAGAGCCTG ATTGTGAAAGATGGATATCAATGGAGAAAGTATGGCCAGAAGGTTACTAAGGATAACCCATCACCTCGAGCTTACTTCAGGTGTTCCATGGCTCCTAATT GCCCCGTCAAGAAGAAGGTCCAAAGATGTGTAGAAGATGATTCAGTACTTGTTGCAAGCTATGATGGAGAACACAACCATGAACCCAATGGTTCACATGG ACAATATTTATGTTCTCCGCATACCTCATCATCAAAAATTTCCATAACTAATCATGTCCTCAAGTGTCCAATCGAAATTCCTCCTCTTCAACCATCTATA GCTCTTGATCTTACTCTTTCAAGTCCCAGTAATCAACAGAAGGAAAATCCTTCTAAAAGATCCATGGAAGACTGCGGCAAGATTAATAATAACTGCAACA AGAACTACATTGAAGAATATGTGGCATCTTTAACTAAAGATCCTACCTTCTCTGTAGCTTTAGCTGCGGCTGTTGCAAGTTCAATGAGTGACCTGTCTTC GTCAAGAATGCTGTGA
AA sequence Show only first row Show all	>Potri.018G019700.1 pacid=42801371 polypeptide=Potri.018G019700.1.p locus=Potri.018G019700 ID=Potri.018G019700.1.v4.1 annot-version=v4.1 MDVFPSCKEKVEALQFELEHRQKENESLRFMLGVMTRRFSILQAEIQETEEHQQKTASNLADGDQACHEILDSNKRARFEVPITKASRILVRSHSNDKSL IVKDGYQWRKYGQKVTKDNPSPRAYFRCSMAPNCPVKKKVQRCVEDDSVLVASYDGEHNHEPNGSHGQYLCSPHTSSSKISITNHVLKCPIEIPPLQPSI ALDLTLSSPSNQQKENPSKRSMEDCGKINNNCNKNYIEEYVASLTKDPTFSVALAAAVASSMSDLSSSRML

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019700 [exp]	0	1
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.006G109100 [exp]	3.46	0.8908
AT5G56980			unknown protein		Potri.006G152200 [exp]	4.00	0.9150
					Potri.010G125900 [exp]	7.48	0.8634
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.003G041400 [exp]	11.22	0.9009
AT5G64810	WRKY	ATWRKY51, WRKY5...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.007G079800 [exp]	12.00	0.8433
AT1G01490			Heavy metal transport/detoxifi...		Potri.017G147500 [exp]	14.83	0.8751
AT3G56400	WRKY	ATWRKY70, WRKY7...	ARABIDOPSIS THALIANA WRKY DNA-...		Potri.013G090300 [exp]	16.43	0.8257	Pt-WRKY54.1
AT4G08850			Leucine-rich repeat receptor-l...		Potri.015G123700 [exp]	16.43	0.8908
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.019G013750 [exp]	16.70	0.8506
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.003G041700 [exp]	18.65	0.8848

Compare expression of checked genes

Potri.018G019700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.