Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80840 263 / 7e-87 WRKY ATWRKY40, WRKY40 WRKY DNA-binding protein 40 (.1) AT4G31800 250 / 1e-81 WRKY ATWRKY18, WRKY18 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) AT2G25000 227 / 3e-73 WRKY ATWRKY60, WRKY60 WRKY DNA-binding protein 60 (.1) AT4G01720 115 / 1e-28 WRKY ATWRKY47, WRKY47 WRKY family transcription factor (.1) AT1G62300 111 / 4e-27 WRKY ATWRKY6, WRKY6 WRKY family transcription factor (.1) AT1G18860 103 / 1e-24 WRKY ATWRKY61, WRKY61 WRKY DNA-binding protein 61 (.1) AT4G22070 102 / 5e-24 WRKY ATWRKY31, WRKY31 WRKY DNA-binding protein 31 (.1) AT1G68150 100 / 6e-24 WRKY ATWRKY9, WRKY9 WRKY DNA-binding protein 9 (.1) AT5G15130 101 / 1e-23 WRKY ATWRKY72, WRKY72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) AT4G04450 100 / 2e-23 WRKY ATWRKY42, WRKY42 WRKY family transcription factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263600 [exp] 484 / 6e-174 AT4G31800 244 / 2e-79 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 18, WRKY DNA-binding protein 18 (.1.2) Potri.001G044500 [exp] 314 / 1e-106 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.003G182200 [exp] 300 / 2e-101 AT1G80840 293 / 1e-98 WRKY DNA-binding protein 40 (.1) Potri.018G019700 [exp] 145 / 2e-41 AT1G80840 137 / 9e-39 WRKY DNA-binding protein 40 (.1) Potri.002G186600 [exp] 110 / 5e-27 AT4G01720 281 / 4e-89 WRKY family transcription factor (.1) Potri.014G111900 [exp] 108 / 3e-26 AT4G01720 298 / 1e-95 WRKY family transcription factor (.1) Potri.014G155100 [exp] 105 / 6e-25 AT1G62300 310 / 6e-98 WRKY family transcription factor (.1) Potri.017G079500 [exp] 103 / 1e-24 AT5G15130 284 / 6e-89 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Potri.015G064100 [exp] 103 / 2e-24 AT5G15130 244 / 1e-72 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024074 [exp] 253 / 3e-82 AT1G80840 291 / 3e-97 WRKY DNA-binding protein 40 (.1) Lus10041660 [exp] 247 / 9e-80 AT1G80840 279 / 1e-92 WRKY DNA-binding protein 40 (.1) Lus10026082 [exp] 244 / 6e-79 AT1G80840 286 / 2e-95 WRKY DNA-binding protein 40 (.1) Lus10002309 [exp] 237 / 5e-76 AT1G80840 293 / 2e-98 WRKY DNA-binding protein 40 (.1) Lus10021554 [exp] 111 / 3e-27 AT1G62300 293 / 1e-92 WRKY family transcription factor (.1) Lus10038028 [exp] 109 / 1e-26 AT4G04450 247 / 3e-76 WRKY family transcription factor (.1) Lus10024246 [exp] 107 / 2e-25 AT5G15130 257 / 2e-76 ARABIDOPSIS THALIANA WRKY DNA-BINDING PROTEIN 72, WRKY DNA-binding protein 72 (.1) Lus10015546 [exp] 103 / 7e-25 AT4G04450 264 / 5e-84 WRKY family transcription factor (.1) Lus10022959 [exp] 104 / 9e-25 AT1G62300 300 / 3e-95 WRKY family transcription factor (.1) Lus10035286 [exp] 102 / 6e-24 AT1G62300 324 / 2e-104 WRKY family transcription factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0274 [poplar] [flax] WRKY-GCM1 PF03106 [poplar] [flax] WRKY WRKY DNA -binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G019800.1 pacid=42801903 polypeptide=Potri.018G019800.1.p locus=Potri.018G019800 ID=Potri.018G019800.1.v4.1 annot-version=v4.1 ATGGAATCGTCATGGGTGAACACTTCTCTTGATCTCAACATCAATCCCTTCAAGCATGTCAATGAAAGCACTCAAGTTCAGAAAATCAAAAAATTCGAGG GATATTCTACTAGGGTACTTGAACAGAAATTACAAGTTAAAAATGAGGATGGTGTTGGTGTTCTTGTTGAAGAGTTGACTCGGATGAGTAGTGAGAACAA GAAGTTGACAGAAATGCTTGGTGTTGTATGCGATAACTATATGGCTTTGCAAAAACATTTAGCTGATTTGGTGAGCAAGAATTCTGTAAAAGAAATCAGT ACACCAATATCATCAAGGAAGAGAAAGGCTGAGAGTGAAGATTATAGCATCGTGATTAATGGAATAAGTGGAGGAAATGCAGAGAGCAGTTCTATTGATG AAGAGTCAAGTAAAAGGCCAAAGGAGAATCTGAAATCAAAGATTTCAAGGACTTACTTTAGGACTAGTGAATCCGATGCAAGCTTGGTTGTGAAGGATGG ATATCAATGGAGAAAATATGGCCAGAAGGTGACCAGAGACAATCCTTCTCCTAGGGCTTACTACAAGTGCTCATTTGCCCCAAGTTGCCCTGTCAAGAAG AAGGTCCAAAGAAGTGCTGAAGACCCTTCTATTTTGGTAGCAACTTATGAAGGAGAGCACAACCACGCTAGCCACTCTCAACATGAACCATCACTAGGCT CGAGCCACGGTTCTAATTTTGGTCCGATTCCCACACAATCACCGATCAGAAGTTCAGCTCCTACTGTGACCCTTGATTTGATCCAAAGTGGAAGGCATGG AGATACTGCTACAAAGACTGTTCAAGAAATGGAAGTGCCTGCACTTCAAAAAATTTTGGTCCAACAAATGGCGTCTTCTTTGACAAGAGATCCAAATTTT ACAGCTGCGCTAGCAGCTGCTATCTCTGGGAGATTCAACCAGACTCGGATGGAGAAATGGTGA
AA sequence Show only first row Show all	>Potri.018G019800.1 pacid=42801903 polypeptide=Potri.018G019800.1.p locus=Potri.018G019800 ID=Potri.018G019800.1.v4.1 annot-version=v4.1 MESSWVNTSLDLNINPFKHVNESTQVQKIKKFEGYSTRVLEQKLQVKNEDGVGVLVEELTRMSSENKKLTEMLGVVCDNYMALQKHLADLVSKNSVKEIS TPISSRKRKAESEDYSIVINGISGGNAESSSIDEESSKRPKENLKSKISRTYFRTSESDASLVVKDGYQWRKYGQKVTRDNPSPRAYYKCSFAPSCPVKK KVQRSAEDPSILVATYEGEHNHASHSQHEPSLGSSHGSNFGPIPTQSPIRSSAPTVTLDLIQSGRHGDTATKTVQEMEVPALQKILVQQMASSLTRDPNF TAALAAAISGRFNQTRMEKW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Potri.018G019800 [exp]	0	1
AT1G34420			leucine-rich repeat transmembr...		Potri.013G114200 [exp]	1.41	0.9206
AT2G23460		ATXLG1, XLG1	extra-large G-protein 1 (.1)		Potri.009G109400 [exp]	1.41	0.9243
AT5G07610			F-box family protein (.1)		Potri.007G027200 [exp]	2.82	0.9068
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	4.58	0.9167	Pt-CRCK3.2
AT2G36800		UGT73C5, DOGT1	UDP-GLUCOSYL TRANSFERASE 73C5,...		Potri.012G048700 [exp]	6.70	0.8953	Pt-GT4.1
AT2G40095			Alpha/beta hydrolase related p...		Potri.010G189600 [exp]	7.48	0.8980
AT5G16120			alpha/beta-Hydrolases superfam...		Potri.017G114800 [exp]	7.61	0.8548
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	8.12	0.8825
AT3G04300			RmlC-like cupins superfamily p...		Potri.002G254800 [exp]	8.48	0.8731
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	8.83	0.9004

Compare expression of checked genes

Potri.018G019800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.