Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10930 576 / 0 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 568 / 0 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT2G25090 489 / 2e-171 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G45820 444 / 3e-154 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT5G58380 423 / 3e-145 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) AT4G18700 422 / 1e-144 ATWL4, CIPK12, SnRK3.9 SNF1-RELATED PROTEIN KINASE 3.9, WPL4-LIKE 4, CBL-interacting protein kinase 12 (.1) AT4G30960 417 / 2e-143 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT1G30270 413 / 4e-141 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G45810 412 / 8e-141 CIPK19, SnRK3.5 SNF1-RELATED PROTEIN KINASE 3.5, CBL-interacting protein kinase 19 (.1) AT5G01810 404 / 2e-138 ATPK10, SnRK3.1, SIP2, PKS3, CIPK15 SNF1-RELATED PROTEIN KINASE 3.1, SOS3-INTERACTING PROTEIN 2, PROTEIN KINASE 10, CBL-interacting protein kinase 15 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263500 [exp] 759 / 0 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.003G181900 [exp] 543 / 0 AT5G25110 460 / 2e-159 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.006G186200 [exp] 448 / 9e-156 AT4G30960 649 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.016G133500 [exp] 449 / 2e-155 AT5G58380 593 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.018G108500 [exp] 441 / 8e-153 AT4G30960 639 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Potri.019G048800 [exp] 439 / 5e-152 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.011G067500 [exp] 429 / 7e-148 AT5G45820 647 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) Potri.019G127500 [exp] 425 / 3e-146 AT5G58380 641 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.013G156000 [exp] 424 / 5e-146 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024448 [exp] 612 / 0 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 609 / 0 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10024075 [exp] 504 / 4e-177 AT5G10930 572 / 0.0 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10022749 [exp] 462 / 9e-161 AT5G58380 598 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10014163 [exp] 452 / 5e-157 AT5G58380 592 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10036280 [exp] 439 / 3e-152 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10021852 [exp] 439 / 6e-152 AT4G30960 658 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) Lus10041653 [exp] 421 / 4e-146 AT5G10930 490 / 1e-173 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) Lus10042229 [exp] 421 / 1e-144 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10007283 [exp] 416 / 8e-143 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain
Representative CDS sequence Show only first row Show all	>Potri.018G019900.1 pacid=42801100 polypeptide=Potri.018G019900.1.p locus=Potri.018G019900 ID=Potri.018G019900.1.v4.1 annot-version=v4.1 ATGGAGGAGAGGCATGTTCTTTTTGGGAAGTATGAGATGGGGAGGCTACTGGGGAAGGGGACTTTTGCTAAAGTTTACTATGGGAAACACTCGGTAACCG GAGACAGTGTGGCTATCAAAGTTATAAACACAGATCAAGTCAAGAAAGAAGGCATGATGGAACAAATCCAGACAGAGATCTCAGTGATGCATCTTGTTCG TCATCCCAACATTGTTGAGCTCAAGGAAGTCATGGCTACAAAGACTAAGATCTTCTTCATCATGGAGTATGTTCGAGGTGGAGAGTTGTTTGCCAAAGTA GCCAAAGGAAGGCTCAAAGAAGAAGTTGCTCGAAAATATTTCCAGCAACTAATCAGCGCGATTGATTATTGTCACAGCAGAGGTGTTTATCATCGAGACT TGAAGCCAGAGAATATATTGCTTGATGAAGACGAAAACTTGAAAATCTCTGATTTTGGCTTGTCAGCCTTACCTGAACAATTGCTGCAAGATGGACTTTT GCATACTCTGTGCGGGACTCCTGCTTATGTTGCCCCAGAAGTTTTGAGAAAGAAAGGCTATGATGGATCAAAAGCAGATACATGGTCATGTGGGGTGATT CTCTACGTGCTTCTTGCAGGATTCTTGCCATTTCAAGATGAAAATGTTATGAAGATGTACAAGAAAATCTTCAAGGCTGAATATGAGTTTCAGCCTTGGT TTTCAACAGATGCTAAGAGGTTGATTTCAAGACTTCTTGTTGCTGATCCTGAAAGGAGAATCACAATTCCTGCCATAATGAGAAATCATTGGTTTCTGAA AGGGTTTTTAAGACCAATGGCCTTTTCAATTCAAGAATCAATCATGGATAAAACAGAAGAAGATCAAGATCTTGATTCTTGTTCTGTTGTCAAGCCTAAA GTATCATCACCAAGATTCTTCAATGCATTCGAGTTCATCTCTTCAATGTCATCTGGGTTTGATCTGTCCAGTCTTTTTGAGACTAAGAAGAAACCAGGGT CGATGTTCACTTCGAAAGTGTCAGCAAGTGCTATCATGGAAAAGATTGAAGGAGTTGCAGAAGGGCTGAATTTTAAGGTAGCAAAAGTTAAAGATTTCAA AGTGAGGTTACAAAGTCCATGTGAGGGAAGAAAGGGGAAGCTGGCAGTGACAACAGAGGTGTTCGAGGTGGCACCGGAGGTTGCGGTGGTGGAGTTCTCC AAGTCTTCCGGAGATACCTTGGAGTATGCCACGTTCTGCAAGGAAGATGTCAGGCCTGCACTAAAAGACATTGTTTGGACATGGCAAGGAGACAATGTTT GTACTAATGATAACAACAATAGTCAAGTAGAAGATTGTGAAATTCAATTGTTGTAG
AA sequence Show only first row Show all	>Potri.018G019900.1 pacid=42801100 polypeptide=Potri.018G019900.1.p locus=Potri.018G019900 ID=Potri.018G019900.1.v4.1 annot-version=v4.1 MEERHVLFGKYEMGRLLGKGTFAKVYYGKHSVTGDSVAIKVINTDQVKKEGMMEQIQTEISVMHLVRHPNIVELKEVMATKTKIFFIMEYVRGGELFAKV AKGRLKEEVARKYFQQLISAIDYCHSRGVYHRDLKPENILLDEDENLKISDFGLSALPEQLLQDGLLHTLCGTPAYVAPEVLRKKGYDGSKADTWSCGVI LYVLLAGFLPFQDENVMKMYKKIFKAEYEFQPWFSTDAKRLISRLLVADPERRITIPAIMRNHWFLKGFLRPMAFSIQESIMDKTEEDQDLDSCSVVKPK VSSPRFFNAFEFISSMSSGFDLSSLFETKKKPGSMFTSKVSASAIMEKIEGVAEGLNFKVAKVKDFKVRLQSPCEGRKGKLAVTTEVFEVAPEVAVVEFS KSSGDTLEYATFCKEDVRPALKDIVWTWQGDNVCTNDNNNSQVEDCEIQLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G019900 [exp]	0	1
AT4G28610	GARP	ATPHR1, PHR1	phosphate starvation response ...		Potri.002G257800 [exp]	5.91	0.6252
AT4G35510			unknown protein		Potri.007G063000 [exp]	8.12	0.6740
AT4G35530			phosphatidylinositolglycan-rel...		Potri.018G026700 [exp]	9.38	0.6014
AT2G38640			Protein of unknown function (D...		Potri.006G113400 [exp]	11.00	0.6899
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	13.30	0.6353
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.010G070750 [exp]	21.90	0.6090
AT2G36350			Protein kinase superfamily pro...		Potri.009G146700 [exp]	24.49	0.5995
					Potri.008G176700 [exp]	28.98	0.5790
AT3G22960		PKP-ALPHA, PKP1	PLASTIDIAL PYRUVATE KINASE 1, ...		Potri.005G216750 [exp]	31.85	0.5781
AT5G41700		ATUBC8, UBC8	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.019G131400 [exp]	34.94	0.5696	UBC.10

Compare expression of checked genes

Potri.018G019900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.