Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 816 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 793 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 781 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 761 / 0 EFR EF-TU receptor (.1) AT3G47110 747 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 461 / 5e-144 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G24130 437 / 5e-137 Leucine-rich receptor-like protein kinase family protein (.1) AT1G17230 420 / 2e-129 Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 417 / 2e-128 Leucine-rich receptor-like protein kinase family protein (.1.2) AT2G33170 417 / 4e-128 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 924 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 918 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G145200 [exp] 908 / 0 AT3G47570 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 902 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 895 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 893 / 0 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G099100 [exp] 892 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 890 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 886 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030855 [exp] 875 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 863 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 862 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 862 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 860 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030856 [exp] 850 / 0 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 850 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 839 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 834 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 824 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G020000.1 pacid=42801875 polypeptide=Potri.018G020000.1.p locus=Potri.018G020000 ID=Potri.018G020000.1.v4.1 annot-version=v4.1 ATGATGAACCTGTTGTCTTCATTTTGTGTCCAGAACCTTGTTGCTGTGCTCATTGTACTGATGCAAGGAAAAGCACTGCCACTGATTACCTCCTCTTTCC TCCTCACTGCAGCTTCAACAATCACTGCTCCTAGTAGCTTTGGTGGAAACGAGACGGATTATGAAGCCTTGCTAGCCTTCAAAGCAAAGATACAAGACCC GCATAGTAATACCTTGAGCTCGTGGAATGATTCTCTCGATTTCTGCAACTGGCCAGGGATCACATGTGGCCGTCGACATGGAAGGGTCAGAATTATCAAT CTAGTGGACCAAAAATTGGCAGGCACCTTGTCTCCTTACGTGGGAAATATTAGCTTCCTTCGAGAAATAAGACTCGCAAACAACACAATTCATGGTGAAA TTCCACCTGAAGTTGGGCGCCTGTTGAGATTACGAGTTCTGATGCTGACCAATAATTCCATAGAAGGCAAAATTCCAGCCAACTTGTCAGGCTGCTCCAG CCTTGCAGAGCTCTATATTGATCGTAACAAGCTTGGAGGTGAAATTCCTACGGAGCTTGGTTTCTTGTCAAAGCTCACAATACTCTCTTTTCGTCAGAAT AATCTCCTGGGAAAGATACCGCACTCCATCGGTAATCTTACCTCCCTTGAAAGTTTGTCTTTGAAAAGAAATGTTCTTGAGGGAACTATTCCTGATTCTT TAGGCCGACTGAAGAGATTAACTAGTCTTCTGCTCGGTGAAAATAAACTTTCGGGTTTCATCCCTCCATCTCTATATAATCTGTCGTTGATTACTACTTT CTATTTGGGTGGCAATGGATTTCGCGGAAGTCTTCCGTCGAATTTAGGCCTATCCTTTCCCCATCTTCAATGGCTTGCATTATGGCAGAACCAGTTTTCC GGACCGATTCCAGGGTCATTAACCAATGCTTCTGAGCTTCAAATTGTTTCTTTTACATATAACAGTTTGACAGGAAAAATACCTGATATTTTTGGAAAAC TACATCATCTCTCTGGACTGCATTTCGGAAGTAATAACCTGGGAACCGGAGGAGATGATGAAATGGCGTTTCTTGCTTCTCTGACCAACTGCAGCATGTT GAAAGTTGTGAGCATCAACAACAACAGATTAGAAGGATCGCTGCCGATTACAGTAGGAAATCTTTCAACATATATGGTTTATTTTGGGCTCTCAGGAAAC CACATAGTCGGACGTATCCCTTCAGGTATAGGGAACCTAGTTAACTTAACTTTCCTATACATGGATCGAAATCATTTCACTGGTGAAATTCCAACTTCTT TTGGTAATCTACGAAAGCTAGAGCAGTTTTCACTCTTTTCCAATAGACTGTCAGGAAAAATTCCATCTTCTTTAGGAAATCTGTCATTGTTGAGTGTCCT TTATTTAGATGATAACAAATTACAAGACACCATCCCTGCTAGTCTTGGAGGTTGTAAAAACTTGGTGTCGTTGGGCCTTTCTAGAAACAACCTCAATGGC AGCATACCAGAACAACTTTTCGGTACCTCCTCTGTATTATTTTCACTGAATCTATCTCATAACCAATTTACTGGTTCCTTGCCTTCAACCATTGGTAGTC TAAAAGGTCTGAGTGAACTGGATGTCTCTTGGAACATGCTGTCTAGTGAAATTCCAACTAGTTTTGGAGGATGCACCAGCCTCGAGGTCCTGCACATGGA GGATAATTTCTTCCAAGGATCTATTCCTTCATCATTTAGTTCTTTGAGGGGAATTCAATTTCTTGACCTTTCTTGTAACAATCTGTCAGGCCAACTTCCA AACTTTCTTGTGACAATCCCTTTCATAAGTTTAAATCTTTCCTATAACAATTTTGAGGGGGAGGTTCCGAGGAAGGGAGTTTTCACAAACAAGAGTGCAG TATCAGTTGTTGGAAATGACAAACTTTGTGGTGGAATTTTGGAATTTCATTTGTCTGAATGTCCCAACAAGGAGCCAAAGAAGACAAAAATGTCTCATCT GCAATATTTATTGGCAATCACAATACCTTGTGCTCTTGTTGGAGCCATCACTGTCTCGTCTTTTTTGTTTTGTTGGTTCAAAAAGAAAAGAAAGGAGCAC TCTTCTGATACTTTATTGAAAGAGTCATTTCCTCAAATCTCTTACGAAAGGCTCTTTAAAGCAACCGATGGATTTTCTACAACCAACTTGATTGGAGTTG GTAGTTTTAGCTCTGTGTACAAAGGAAGGATTGATGAAGATGGAACACTGGTTGCAATCAAAGTTCTTAACCTGCAACGCCGTGGAGCGTCTAAAAGTTT CAAAGATGAATGTGAAGCCTTGAGAAACATTCGGCATCGAAATCTTGTGAAGATCATAACTTCTTGCTCAAGCATTGATTTTCAAGGTAATAATTTTAAA GCTCTAGTTTATGAGTACATGCCTAAAGGGAGTCTGGAGAAATGGTTGCATCCTACTCAAGAAACACATGATGATCAGCAGATAAATCAAGTTCAGCGTC CAAACCTTCTTGAGAGAATCAACATTGCCATTGATGTGGCTGCTGCACTTGACTATCTTCATCACCATTGCCACAGCCCAATCATTCATTGTGATGTAAA ACCAAGTAATATTCTTCTTGATAAAGACATGATTGGCCATCTTGGGGATTTTGGGCTAGCTAGAATTTTTCAAGAATTTTCAGAACCAAGTCTTGAAAGC AGCTCGGCTGGAATAAAGGGAACTACTGGATATGCTGCACCAGAGTATGGCCAAGGAAGAGAGGTGTCAATAGATGGAGATGTCTACAGTTATGGGATCC TATTGTTGGAGATGATGACAGGGAAGAGACCTATCGATGACACATTTGAGAAAGGCCTTAATCTTCACATGTTTGCCAAGATGGCCCTGCCCGACCATGT TATAGAGATTACAGACCCAGTGCTTCTAAGTGAAAGACACTTGGAAAATGCAGCAAGCATGGAGGAGTGCCTGACTTCTTTGGTGAAAATTGGAGTGGCA TGTTCCATGGATTCACCTAGAGATCGAATGGACATGAGCAGGGTTGTCCGCGAGTTGCTCATGGTCAGGGATACTTTTCAAGGAACTGCAAGTAGGCCCG AAAACAACAAGTATCCAGGTGCTCATGGTTTTCACAGCTAA
AA sequence Show only first row Show all	>Potri.018G020000.1 pacid=42801875 polypeptide=Potri.018G020000.1.p locus=Potri.018G020000 ID=Potri.018G020000.1.v4.1 annot-version=v4.1 MMNLLSSFCVQNLVAVLIVLMQGKALPLITSSFLLTAASTITAPSSFGGNETDYEALLAFKAKIQDPHSNTLSSWNDSLDFCNWPGITCGRRHGRVRIIN LVDQKLAGTLSPYVGNISFLREIRLANNTIHGEIPPEVGRLLRLRVLMLTNNSIEGKIPANLSGCSSLAELYIDRNKLGGEIPTELGFLSKLTILSFRQN NLLGKIPHSIGNLTSLESLSLKRNVLEGTIPDSLGRLKRLTSLLLGENKLSGFIPPSLYNLSLITTFYLGGNGFRGSLPSNLGLSFPHLQWLALWQNQFS GPIPGSLTNASELQIVSFTYNSLTGKIPDIFGKLHHLSGLHFGSNNLGTGGDDEMAFLASLTNCSMLKVVSINNNRLEGSLPITVGNLSTYMVYFGLSGN HIVGRIPSGIGNLVNLTFLYMDRNHFTGEIPTSFGNLRKLEQFSLFSNRLSGKIPSSLGNLSLLSVLYLDDNKLQDTIPASLGGCKNLVSLGLSRNNLNG SIPEQLFGTSSVLFSLNLSHNQFTGSLPSTIGSLKGLSELDVSWNMLSSEIPTSFGGCTSLEVLHMEDNFFQGSIPSSFSSLRGIQFLDLSCNNLSGQLP NFLVTIPFISLNLSYNNFEGEVPRKGVFTNKSAVSVVGNDKLCGGILEFHLSECPNKEPKKTKMSHLQYLLAITIPCALVGAITVSSFLFCWFKKKRKEH SSDTLLKESFPQISYERLFKATDGFSTTNLIGVGSFSSVYKGRIDEDGTLVAIKVLNLQRRGASKSFKDECEALRNIRHRNLVKIITSCSSIDFQGNNFK ALVYEYMPKGSLEKWLHPTQETHDDQQINQVQRPNLLERINIAIDVAAALDYLHHHCHSPIIHCDVKPSNILLDKDMIGHLGDFGLARIFQEFSEPSLES SSAGIKGTTGYAAPEYGQGREVSIDGDVYSYGILLLEMMTGKRPIDDTFEKGLNLHMFAKMALPDHVIEITDPVLLSERHLENAASMEECLTSLVKIGVA CSMDSPRDRMDMSRVVRELLMVRDTFQGTASRPENNKYPGAHGFHS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.018G020000 [exp]	0	1
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.018G152200 [exp]	8.71	0.7858
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G064900 [exp]	10.00	0.7602
AT1G60190		AtPUB19	plant U-box 19, ARM repeat sup...		Potri.015G074200 [exp]	13.03	0.7183
AT4G26080		AtABI1, ABI1	ABA INSENSITIVE 1, Protein pho...		Potri.006G164632 [exp]	13.26	0.7484
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.017G094500 [exp]	13.41	0.7354
AT2G18193			P-loop containing nucleoside t...		Potri.007G020500 [exp]	14.14	0.7672
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.018G120800 [exp]	17.14	0.7585
AT1G35710			Protein kinase family protein ...		Potri.019G122500 [exp]	18.38	0.7253
					Potri.004G037750 [exp]	22.97	0.7142
AT2G30090			Acyl-CoA N-acyltransferases (N...		Potri.009G074200 [exp]	24.45	0.7103

Compare expression of checked genes

Potri.018G020000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.