Plant FIBer expression Database

Potri.018G020301 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.018G020301.1 pacid=42801433 polypeptide=Potri.018G020301.1.p locus=Potri.018G020301 ID=Potri.018G020301.1.v4.1 annot-version=v4.1
ATGAATTCAACAGGATCAACAAGTATGCATAGATCCAATTGGTCAGAGTTTTTACTTCTAATCATTACAATCCATACGATGAAGCTTGGATTCATGTACC
ATTTAAGTTCAGAACCCTTTTGTACCTTGAATTGGAGAGCCCAATTTGTGCATCCTAGAGGGGAAAAAAAAGGAAAAAAAAGAAGTGAAATCATGGAGTC
ACAAAATGCCCTGTTCTCAAAACACAGTACTTCCCAAAAACAGTACAGAAAACGGTACAGCCTACTGGAAGAAGAAACAGTTGGGATTTGGGAATCCTCC
CTGTATTTTCCCGCCATAGCACTTTTTTGTGTCCCCATCAGTCAGAAAATAAGTGGATAA
AA sequence
>Potri.018G020301.1 pacid=42801433 polypeptide=Potri.018G020301.1.p locus=Potri.018G020301 ID=Potri.018G020301.1.v4.1 annot-version=v4.1
MNSTGSTSMHRSNWSEFLLLIITIHTMKLGFMYHLSSEPFCTLNWRAQFVHPRGEKKGKKRSEIMESQNALFSKHSTSQKQYRKRYSLLEEETVGIWESS
LYFPAIALFCVPISQKISG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.018G020301
[exp]
0 1
AT3G13226 regulatory protein RecX family... Potri.001G467400
[exp]
1.73 0.8170
AT3G62970 zinc finger (C3HC4-type RING f... Potri.014G134400
[exp]
12.84 0.7490
AT2G29200 APUM1 pumilio 1 (.1) Potri.008G058300
[exp]
13.30 0.7764
AT4G16700 PSD1 phosphatidylserine decarboxyla... Potri.003G078300
[exp]
16.61 0.7290
Potri.003G044301
[exp]
18.43 0.7604
AT5G50340 ATP-dependent peptidases;nucle... Potri.001G191200
[exp]
24.04 0.7211
AT4G14880 OLD3, CYTACS1, ... ONSET OF LEAF DEATH 3, O-acety... Potri.013G035200
[exp]
25.53 0.7697
AT2G42280 bHLH bHLH130 basic helix-loop-helix (bHLH) ... Potri.016G050500
[exp]
27.49 0.7309
AT5G36930 Disease resistance protein (TI... Potri.019G001600
[exp]
28.84 0.7526
AT4G10180 FUS2, DET1, ATD... FUSCA 2, DE-ETIOLATED 1, light... Potri.013G161700
[exp]
29.39 0.7566 Pt-DET1.1

Potri.018G020301 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.