Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G24270 889 / 0 ALDH11A3 aldehyde dehydrogenase 11A3 (.1.2.3.4) AT1G74920 221 / 6e-66 ALDH10A8 aldehyde dehydrogenase 10A8 (.1.2) AT1G79440 205 / 1e-59 ENF1, SSADH1, ALDH5F1 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) AT3G48170 199 / 7e-58 ALDH10A9 aldehyde dehydrogenase 10A9 (.1) AT3G48000 184 / 7e-52 ALDH2A, ALDH2B4 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) AT1G23800 184 / 9e-52 ALDH2B7 aldehyde dehydrogenase 2B7 (.1) AT3G24503 173 / 6e-48 ALDH1A, REF1, ALDH2C4 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1) AT3G66658 154 / 1e-40 ALDH22A1 aldehyde dehydrogenase 22A1 (.1.2) AT2G14170 149 / 2e-39 ALDH6B2 aldehyde dehydrogenase 6B2 (.1.2.3) AT1G54100 131 / 5e-33 ALDH7B4 aldehyde dehydrogenase 7B4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G186800 [exp] 918 / 0 AT2G24270 951 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.018G109700 [exp] 914 / 0 AT2G24270 950 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Potri.010G174000 [exp] 218 / 1e-64 AT1G79440 810 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Potri.015G070600 [exp] 202 / 5e-59 AT1G74920 896 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G075600 [exp] 201 / 3e-58 AT1G74920 861 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Potri.012G078700 [exp] 192 / 7e-55 AT3G48000 872 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.002G189900 [exp] 187 / 4e-53 AT1G23800 899 / 0.0 aldehyde dehydrogenase 2B7 (.1) Potri.015G074100 [exp] 183 / 2e-51 AT3G48000 885 / 0.0 aldehyde dehydrogenase 2A, aldehyde dehydrogenase 2B4 (.1) Potri.009G078600 [exp] 160 / 3e-43 AT2G14170 893 / 0.0 aldehyde dehydrogenase 6B2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003640 [exp] 907 / 0 AT2G24270 931 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10036288 [exp] 905 / 0 AT2G24270 929 / 0.0 aldehyde dehydrogenase 11A3 (.1.2.3.4) Lus10042149 [exp] 196 / 2e-56 AT1G74920 850 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10012999 [exp] 195 / 7e-56 AT1G23800 889 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10029166 [exp] 194 / 1e-55 AT1G23800 886 / 0.0 aldehyde dehydrogenase 2B7 (.1) Lus10043470 [exp] 181 / 3e-51 AT1G74920 818 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10042148 [exp] 180 / 7e-51 AT1G74920 763 / 0.0 aldehyde dehydrogenase 10A8 (.1.2) Lus10034115 [exp] 180 / 5e-50 AT3G48170 825 / 0.0 aldehyde dehydrogenase 10A9 (.1) Lus10001845 [exp] 177 / 3e-49 AT1G79440 741 / 0.0 SUCCINIC SEMIALDEHYDE DEHYDROGENASE 1, SUCCINIC SEMIALDEHYDE DEHYDROGENASE, ENLARGED FIL EXPRESSION DOMAIN 1, aldehyde dehydrogenase 5F1 (.1) Lus10023626 [exp] 159 / 8e-43 AT3G24503 753 / 0.0 REDUCED EPIDERMAL FLUORESCENCE1, aldehyde dehydrogenase 1A, aldehyde dehydrogenase 2C4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0099 [poplar] [flax] ALDH-like PF00171 [poplar] [flax] Aldedh Aldehyde dehydrogenase family
Representative CDS sequence Show only first row Show all	>Potri.018G020600.1 pacid=42801896 polypeptide=Potri.018G020600.1.p locus=Potri.018G020600 ID=Potri.018G020600.1.v4.1 annot-version=v4.1 ATGGCAGGAACTTCAGTGTTTGCAGAGCTAGTTGATGAAGATACTACTGTTTTTAAGTTCTACTCAGATGGTGAGTGGAAAAAGTCTACATCAGGAAAAT TAGTATCCATCATCAACCCTACCACTAGAAAGACTCAGTACAAGGTACAAGCTTGTACTCAAGAAGAGGTGAATAAGATCATAGAAGCAGCAAAAACAGC TCAAAAATCATGGGCCAAGACTCCACTGTGGAAAAGAGCAGAATTACTTCACAAAGCAGCTGCAATATTGAAAGAGCACCGAGCACCAATTGCTGAATGT CTTGTCAAAGAGATTGCGAAACCGGCTAAAGATGCAGTCACTGAAGTGGTGAGGTCAGGGGATTTGGTGTCATACTGTGCTGAAGAAGGGGTTAGGATTC TTGGAGAAGGGAAATTTCTGGTGTCTGATAGCTTTCCTGGGAATGAAAGGACCAAATACTGCCTCACTTCAAAGATTCCGCTTGGCGTTGTCTTGGCTAT CCCACCTTTTAACTATCCTGTCAATCTTGCTGTCTCAAAAATTGCTCCTGCACTAATTGCCGGAAACTCCATCGTGCTCAAGCCCCCAACCCAGGGTGCT GTGGCTGCACTACACATGGTCCATTGCTTTCACTTGGCTGGTTTTCCCAAAGGTCTCGTTAGCTGTGTTACTGGAAAGGGTTCAGAGATTGGTGACTTCC TCACAATGCATCCTGGTGTTAGCTGTATAAGTTTTACAGGTGGAGACACTGGAATAGCAATCTCAAAGAAGGCTGGGATGATCCCACTTCAAATGGAACT AGGTGGTAAAGATGCTTGTATCATCCTAGAAGATGGTGATTTGGATTTAGCAGCAGCTAATATCATTAAAGGAGGCTTCTCGTACAGTGGTCAAAGGTGC ACGGCTGTGAAGGTTATCCTCATCATGGAATCGGTAGCTGACACTCTTGTTGAAAAGGTTAAAGCTAAAGTAGCAAAACTGACTGTTGGGCCACCTGAGG ATGACTGTGATATTACTCCAGTTGTTACAGAGTCTTCTGCAAACTTCATTGAAGGACTGGTCATGGATGCCAAGCAGAAAGGGGCAACATTCTGTCAAGA GTATAAGCGGGAGGGCAACCTAATATGGCCATTGTTGTTAGATAACGTCCGGCCTGATATGAGGATTGCTTGGGAAGAGCCTTTTGGTCCAGTTTTACCA GTTATCAGAATAAACTCTATTGAAGAAGCTATCTACCACAGCAATGCTAGCAATTTTGGTCTTCAGGGATGCATCTTTACAAGAGATATAAACAAAGCAA TTTTAATTAGTGATGCTATGGAGACAGGAACAGTGCAGATCAATTCCGCACCAGCTCGTGGACCTGATCATTTCCCATTCCAGGGATTGAAGGACAGTGG AATCGGTTCCCAGGGAATCACCAATAGTATTAACATGATGACGAAGATCAAGAGTACAGTAATCAACTTACCTGCCCCTTCCTACGCTATGGGTTGA
AA sequence Show only first row Show all	>Potri.018G020600.1 pacid=42801896 polypeptide=Potri.018G020600.1.p locus=Potri.018G020600 ID=Potri.018G020600.1.v4.1 annot-version=v4.1 MAGTSVFAELVDEDTTVFKFYSDGEWKKSTSGKLVSIINPTTRKTQYKVQACTQEEVNKIIEAAKTAQKSWAKTPLWKRAELLHKAAAILKEHRAPIAEC LVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVVLAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGA VAALHMVHCFHLAGFPKGLVSCVTGKGSEIGDFLTMHPGVSCISFTGGDTGIAISKKAGMIPLQMELGGKDACIILEDGDLDLAAANIIKGGFSYSGQRC TAVKVILIMESVADTLVEKVKAKVAKLTVGPPEDDCDITPVVTESSANFIEGLVMDAKQKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLP VIRINSIEEAIYHSNASNFGLQGCIFTRDINKAILISDAMETGTVQINSAPARGPDHFPFQGLKDSGIGSQGITNSINMMTKIKSTVINLPAPSYAMG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G24270		ALDH11A3	aldehyde dehydrogenase 11A3 (....		Potri.018G020600 [exp]	0	1
AT2G31130			unknown protein		Potri.004G055300 [exp]	2.23	0.8835
AT4G00950		MEE47	maternal effect embryo arrest ...		Potri.014G100200 [exp]	4.00	0.8456
AT1G69490	NAC	NAP, ANAC029, A...	Arabidopsis NAC domain contain...		Potri.014G025700 [exp]	6.00	0.8344	NAC146
AT5G17600			RING/U-box superfamily protein...		Potri.006G144200 [exp]	6.70	0.8196
AT5G13660			unknown protein		Potri.008G051300 [exp]	6.70	0.8091
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.018G021300 [exp]	7.34	0.8352	ARR12.2
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.008G136100 [exp]	10.48	0.8028	RDR902,Pt-RDRP.1
AT5G64730			Transducin/WD40 repeat-like su...		Potri.001G306500 [exp]	12.00	0.7412
AT4G33890			unknown protein		Potri.001G296200 [exp]	14.49	0.7868
AT5G12200		PYD2	pyrimidine 2 (.1)		Potri.001G273400 [exp]	14.86	0.7951

Compare expression of checked genes

Potri.018G020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.