Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25110 347 / 8e-123 AtSDF2, ATSDL, SDF2 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G263200 [exp] 393 / 5e-141 AT2G25110 345 / 2e-122 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010594 [exp] 360 / 3e-128 AT2G25110 350 / 4e-124 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1) Lus10019365 [exp] 355 / 3e-126 AT2G25110 348 / 2e-123 ATSDF2-LIKE, Arabidopsis thaliana STROMAL CELL-DERIVED FACTOR 2-like protein precursor, stromal cell-derived factor 2-like protein precursor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0066 [poplar] [flax] Trefoil PF02815 [poplar] [flax] MIR MIR domain
Representative CDS sequence Show only first row Show all	>Potri.018G020700.2 pacid=42800528 polypeptide=Potri.018G020700.2.p locus=Potri.018G020700 ID=Potri.018G020700.2.v4.1 annot-version=v4.1 ATGGCTCTTGCTTTCCTCGGTCTCTCTATCTTTCTCTTCCTCAATCTTGATCTTGATGGCGCTTCCTTCTCCCCTGCCTCTGCTTCCTCGTCCTCCGCCT CTGATTCCGCCCTCGAGATTACTTATGGGAGTGTTATTAAGCTGATGCATGAGAGGACGAAATATAGGCTGCATTCACATGATGTGCCTTATGGGTCTGG AAGTGGGCAGCAATCTGTTACTGGGTTTCCTAATGTTGATGATGCTAATAGCTATTGGATTGTTAGGCCTCAGCCAGGGACAAATGCTAAACAAGGTGAC ACCATTAAGAGTGGGACAATTGTCCGTCTGCAACACATGAAGACTCGAAAGTGGCTGCACAGTCATTTGCATGCATCCCCAATCTCTGGCAACTTAGAGG TTAGTTGCTTTGGGGGAGAGAATGAATCTGACACTGGAGATTACTGGAGGCTTTTGATTGAAGGGAGTGGAAAGACATGGAAGCAAGATCAAAGGATTCG GCTTCAGCATGTCGACACCCAGGGCTACTTGCATAGTCATGACAAGAAATACCAACGAATTGCTGGGGGGCAGCAGGAGGTATGTGGTGTCCGAGAAAAA CGTGCTGACAATGTTTGGCTGACAGCAGAAGGCGTATACCTCCCTATTACTGCAAGCAAGTAA
AA sequence Show only first row Show all	>Potri.018G020700.2 pacid=42800528 polypeptide=Potri.018G020700.2.p locus=Potri.018G020700 ID=Potri.018G020700.2.v4.1 annot-version=v4.1 MALAFLGLSIFLFLNLDLDGASFSPASASSSSASDSALEITYGSVIKLMHERTKYRLHSHDVPYGSGSGQQSVTGFPNVDDANSYWIVRPQPGTNAKQGD TIKSGTIVRLQHMKTRKWLHSHLHASPISGNLEVSCFGGENESDTGDYWRLLIEGSGKTWKQDQRIRLQHVDTQGYLHSHDKKYQRIAGGQQEVCGVREK RADNVWLTAEGVYLPITASK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.018G020700 [exp]	0	1
AT5G28540		BIP1	heat shock protein 70 (Hsp 70)...		Potri.012G017600 [exp]	1.73	0.8211	BIP.3
AT1G80040			unknown protein		Potri.005G121100 [exp]	8.71	0.7787
AT2G25110		AtSDF2, ATSDL, ...	ATSDF2-LIKE, Arabidopsis thali...		Potri.006G263200 [exp]	10.95	0.7423
					Potri.001G371500 [exp]	12.24	0.7935
AT3G53580			diaminopimelate epimerase fami...		Potri.016G120900 [exp]	17.72	0.7993
AT5G07120		SNX2b	sorting nexin 2B (.1)		Potri.019G124200 [exp]	21.00	0.7302
AT5G40690			unknown protein		Potri.001G338100 [exp]	22.91	0.7088
AT4G21610		LOL2	lsd one like 2 (.1)		Potri.004G043100 [exp]	23.49	0.6452
AT1G32260			unknown protein		Potri.003G095600 [exp]	26.85	0.7665
AT5G11340			Acyl-CoA N-acyltransferases (N...		Potri.018G032400 [exp]	28.98	0.7461

Compare expression of checked genes

Potri.018G020700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.