Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G69360 54 / 1e-07 Plant protein of unknown function (DUF863) (.1) AT1G26620 52 / 9e-07 Plant protein of unknown function (DUF863) (.1) AT1G13940 49 / 8e-06 Plant protein of unknown function (DUF863) (.1) AT5G57340 42 / 0.0005 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262600 [exp] 600 / 0 AT1G13940 53 / 4e-07 Plant protein of unknown function (DUF863) (.1) Potri.010G162000 [exp] 50 / 3e-06 AT1G13940 437 / 2e-136 Plant protein of unknown function (DUF863) (.1) Potri.018G090000 [exp] 49 / 3e-06 AT5G57340 72 / 8e-15 unknown protein Potri.008G092800 [exp] 48 / 1e-05 AT1G13940 459 / 2e-144 Plant protein of unknown function (DUF863) (.1) Potri.005G145800 [exp] 42 / 0.0004 AT5G67390 87 / 1e-21 unknown protein Potri.004G125900 [exp] 42 / 0.0007 AT1G69360 149 / 2e-36 Plant protein of unknown function (DUF863) (.1) Potri.006G165500 [exp] 42 / 0.0008 AT5G57340 62 / 2e-11 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10036807 [exp] 48 / 2e-05 AT1G69360 254 / 9e-73 Plant protein of unknown function (DUF863) (.1) Lus10034722 [exp] 47 / 4e-05 AT1G13940 106 / 3e-23 Plant protein of unknown function (DUF863) (.1) Lus10037122 [exp] 46 / 7e-05 AT1G69360 257 / 8e-74 Plant protein of unknown function (DUF863) (.1) Lus10011080 [exp] 44 / 0.0001 AT5G67390 91 / 7e-23 unknown protein Lus10019291 [exp] 41 / 0.0008 AT5G67390 95 / 2e-24 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G020800.4 pacid=42800322 polypeptide=Potri.018G020800.4.p locus=Potri.018G020800 ID=Potri.018G020800.4.v4.1 annot-version=v4.1 ATGGATCAGATACGAAAGACAATGATGCAACATGAAGCTTTGTTTAAGGAACAGGTTCAGGCACTGCACAAGCTGTACAATATCCAGAAAGCAGCAATGC AGGAAATAAGGGGAAGAAATTATTCTCAGGCACGAGTGCTTGCATTTAATCCTGAAAGTCTTGTACTTGTGGAAAGCCAACATTGTGGTTCTGTTTTGGA AAGGAAACCTTCGAGGCCGGTGTTTACTGCTGGTCGAGGACTTAAGAAAGATCCATTGGCTCTTTCTTTGCGTCCGTTTTGCACATTCAAAGAGAATAAA GGTAGTGGCTTTCTGTGGATTGATGGCATAGGAGATGGAACTTCCCCCCCTGCTCATAGAAAACCTGTGAGAGATTTTGATCTTGAAAAGGTCCCAGAAG ACGAAGCTGATGAGTCCGCTGATCTTGAAGGAATACCAAAGCAATGGAAAGGAAGCAACTTGCCAGAATCTACTGAATTGTTTCAAGATTTTGGAAGCAG TGGTGAAGTTGCATTAACCAGTCCAAAGTCAGAACTACACAATAGTCATGATGACGACGTAGATTCATTTCCCAAAGATCCTGTCAAATGCTCTCAAGAT TCTTCAATCCTGGAACCGAAACAACTTGACGAGTTCAATATCCAAAGGTCGATTCACTTGGAAACAAACTCCAATCTGGCACAGAAAAATCTGAACTTAC CTGCTGTTGCGAAGGACTCAAGCAATGGAAGCAATAGCATCAAATCCCAGGACACAGAGTTCTGCAAGAAAAAAGATACTTGTGTCAGTAGGGACACTAG TTGCAAGGAAGATCAGGCAAGCCCCAGAAGCAAGGAAGTCTTCCTTTCGAAATGTGAAGAAGTGCCCCTAATAAGCCAAGATGTTTTGAGATCTTCAGCC TCCTCTACCCACACAGTTTATGAAATCAAACACACAGACAGTAATAGTCATTCAAACGGTGAACACGAAAACACTATAAGCTTGGAGAAGACTCCTGTTG TAACAAAGGACAATCAGAACAAGAAGGGTAAATCGGTCCTTTATGAAGAATGTGAAAGTCTGGCAGCTGAAATTTTGCTCAGTTTTGCACCCAATAAATC ACAGGCTGATACTGAAAGGCATTCAGCGGAAGCTGAGTCAGGTAATTCTTATGGAGACCTTACAACTACGGATGAGAAGCCAAGTTTGTGTCAGAAAAGA TGTGCAACCTTTAGCAGTGGTGGTAGAGTTTACGAATCCTTGAGCTGGACACATTCAGCTAATAGGATGAGGACTATTAAAAGACACCAGCAGTAA
AA sequence Show only first row Show all	>Potri.018G020800.4 pacid=42800322 polypeptide=Potri.018G020800.4.p locus=Potri.018G020800 ID=Potri.018G020800.4.v4.1 annot-version=v4.1 MDQIRKTMMQHEALFKEQVQALHKLYNIQKAAMQEIRGRNYSQARVLAFNPESLVLVESQHCGSVLERKPSRPVFTAGRGLKKDPLALSLRPFCTFKENK GSGFLWIDGIGDGTSPPAHRKPVRDFDLEKVPEDEADESADLEGIPKQWKGSNLPESTELFQDFGSSGEVALTSPKSELHNSHDDDVDSFPKDPVKCSQD SSILEPKQLDEFNIQRSIHLETNSNLAQKNLNLPAVAKDSSNGSNSIKSQDTEFCKKKDTCVSRDTSCKEDQASPRSKEVFLSKCEEVPLISQDVLRSSA SSTHTVYEIKHTDSNSHSNGEHENTISLEKTPVVTKDNQNKKGKSVLYEECESLAAEILLSFAPNKSQADTERHSAEAESGNSYGDLTTTDEKPSLCQKR CATFSSGGRVYESLSWTHSANRMRTIKRHQQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G69360			Plant protein of unknown funct...		Potri.018G020800 [exp]	0	1
AT1G05200		GLUR3, ATGLR3.4	glutamate receptor 3.4 (.1.2)		Potri.002G230000 [exp]	5.00	0.9236	Pt-GLUR3.3
AT1G07050			CCT motif family protein (.1)		Potri.001G281700 [exp]	8.36	0.9117
AT3G19360	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G061600 [exp]	11.74	0.8946
AT1G70820			phosphoglucomutase, putative /...		Potri.008G131400 [exp]	11.74	0.9114
AT2G29670			Tetratricopeptide repeat (TPR)...		Potri.001G250100 [exp]	12.00	0.8920
					Potri.017G079000 [exp]	13.22	0.8984
AT4G27290			S-locus lectin protein kinase ...		Potri.001G410800 [exp]	17.97	0.8795
AT2G25870			haloacid dehalogenase-like hyd...		Potri.018G057500 [exp]	20.12	0.8663
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.011G025200 [exp]	27.65	0.8919
AT5G25150		TAF5	TBP-associated factor 5 (.1)		Potri.017G079100 [exp]	28.14	0.8396

Compare expression of checked genes

Potri.018G020800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.