Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PKL.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25170 1817 / 0 CKH2, SSL2, GYM, CHD3, PKL, CHR6 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) AT4G31900 1190 / 0 PKR2 PICKLE RELATED 2, chromatin remodeling factor, putative (.1.2) AT5G44800 568 / 1e-171 PKR1, CHR4, MI-2-LIKE PICKLE RELATED 1, chromatin remodeling 4 (.1) AT2G13370 558 / 5e-171 CHR5 chromatin remodeling 5 (.1) AT3G06400 416 / 5e-125 CHR11 chromatin-remodeling protein 11 (.1.2.3) AT5G18620 416 / 1e-124 CHR17 chromatin remodeling factor17 (.1.2) AT5G19310 373 / 3e-109 Homeotic gene regulator (.1) AT3G06010 370 / 6e-108 ATCHR12 Homeotic gene regulator (.1) AT5G66750 336 / 6e-99 CHR01, CHA1, SOM1, CHR1, SOM4, DDM1, ATDDM1 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) AT2G44980 334 / 2e-97 ASG3 ALTERED SEED GERMINATION 3, SNF2 domain-containing protein / helicase domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G262200 [exp] 2559 / 0 AT2G25170 1826 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Potri.003G110100 [exp] 591 / 1e-179 AT5G44800 1988 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G123400 [exp] 586 / 9e-178 AT5G44800 1996 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Potri.001G253400 [exp] 550 / 9e-168 AT2G13370 2206 / 0.0 chromatin remodeling 5 (.1) Potri.009G047800 [exp] 544 / 1e-165 AT2G13370 2129 / 0.0 chromatin remodeling 5 (.1) Potri.010G021400 [exp] 420 / 4e-126 AT3G06400 1748 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.008G205600 [exp] 415 / 2e-124 AT3G06400 1724 / 0.0 chromatin-remodeling protein 11 (.1.2.3) Potri.019G129900 [exp] 365 / 2e-109 AT5G66750 1047 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Potri.007G026700 [exp] 365 / 2e-109 AT5G66750 993 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005339 [exp] 1970 / 0 AT2G25170 1787 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10041019 [exp] 1956 / 0 AT2G25170 1776 / 0.0 SUPPRESSOR OF SLR 2, GYMNOS, CYTOKININ-HYPERSENSITIVE 2, chromatin remodeling factor CHD3 (PICKLE) (.1) Lus10038363 [exp] 578 / 9e-175 AT5G44800 1916 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10036223 [exp] 559 / 6e-170 AT5G44800 1780 / 0.0 PICKLE RELATED 1, chromatin remodeling 4 (.1) Lus10022423 [exp] 544 / 1e-165 AT2G13370 2250 / 0.0 chromatin remodeling 5 (.1) Lus10009711 [exp] 530 / 8e-162 AT2G13370 2115 / 0.0 chromatin remodeling 5 (.1) Lus10033967 [exp] 414 / 2e-119 AT5G18620 1650 / 0.0 chromatin remodeling factor17 (.1.2) Lus10010522 [exp] 370 / 2e-108 AT3G06010 1358 / 0.0 Homeotic gene regulator (.1) Lus10041735 [exp] 364 / 2e-108 AT5G66750 1069 / 0.0 SOMNIFEROUS 1, DECREASED DNA METHYLATION 1, chromatin remodeling 1 (.1) Lus10034064 [exp] 367 / 4e-107 AT3G06010 1422 / 0.0 Homeotic gene regulator (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain CL0049 [poplar] [flax] Tudor PF00385 [poplar] [flax] Chromo Chromo (CHRromatin Organisation MOdifier) domain CL0390 [poplar] [flax] zf-FYVE-PHD PF00628 [poplar] [flax] PHD PHD-finger CL0023 [poplar] [flax] P-loop_NTPase PF04851 [poplar] [flax] ResIII Type III restriction enzyme, res subunit CL0023 [poplar] [flax] PF06461 [poplar] [flax] DUF1086 Domain of Unknown Function (DUF1086) CL0023 [poplar] [flax] PF06465 [poplar] [flax] DUF1087 Domain of Unknown Function (DUF1087)
Representative CDS sequence Show only first row Show all	>Potri.018G021100.2 pacid=42801776 polypeptide=Potri.018G021100.2.p locus=Potri.018G021100 ID=Potri.018G021100.2.v4.1 annot-version=v4.1 ATGACTACCCCTTTTAAAACAGAACAATGTAATAAGATGAATAGTAAGGAAATGAGTAGCTTAGTGGAGAGGCTACGTGTTAGATCAGAAAGGAGGCCAA TTTATAACCTGGATGAATCAGATGATGATGCTGATTTTGTTTCTGGGAAAGCTAAAAAACCCCAGGAGAAAATTGAAAGATTTGTCAGGGATGATGCGAA GGAGGATTCCTGTCAAGCTTGCGGAGAGAGTGAGAATCTTCTGAATTGTGAAACTTGCACTTATGCTTACCATCCCAAGTGTCTGCTTCCACCACTAAAA GCTCCTTTTCCTAGCAATTGGAGATGCCCTGAATGTGTTAGCCCTCTGAATGATATTGATAAGTTATTGGACACTGAAATGCGCCCTACCGTAGCTGATG ATAGTGATGCCTCTAAGCTAGGCTCAAAGCAAATTTTTGTAAAACAGTATCTTGTGAAGTGGAAAGGCTTATCTTATCTACATTGCACTTGGGTACCTGA GAGAGAGTTTCTAAAAGCTTTCAAGTCAAATCCTCGTCTGAAGACTAAAGTAAACAATTTCAATCGTCAAATGGCGTCGAACAATAACTCTGAGGATGAC TTTGTTGCTATCCGACCTGAATGGACAACTGTTGATCGAATTCTTGCTTGCAGGGGAGTTGAGGGTGAGAAGGAATATCTTGTGAAGTACAAGGAACTTC CTTATGATGAATGTTATTGGGAATTTGAATCAGATGTATCTACATTCCAGCCTGAAATAGAAAGATTTAATAGAATTCAGTCTAGGTCTCACAAACCGAG TAAGCAAAAGAGCAGCCTTCAAGATGCTACTGATTCAAAGAAGAAATCAAAAGAATTTCAACAGTATGAACACAGTCCTGAATTTCTTTCTGGAGGCTCA TTGCATCCATATCAGCTAGAAGGGCTGAACTTCTTACGTTTTTCTTGGTCCAAACAAACACATGTAATACTTGCTGATGAGATGGGCCTTGGCAAAACTA TACAGAGTATTGCATTTTTAGCATCTCTTTTTGAAGAAGGCATCTCTCATCATTTGGTAGTAGCTCCACTGTCAACATTGCGAAACTGGGAACGTGAATT TGCAACATGGGCGCCTCAAATGAATGTTGTTATGTATGTTGGCTCTGCACAAGCTCGTGCTGTCATTAGGGAATATGAATTTTACTACCCCAAGAAGCAC AAGAAGATCAAGAAAAAGAAATCTGGTCAAGTTGTCACTGAAAGAAAGCAAGATAGAATAAAATTTGATGTGCTTCTAACGTCTTATGAGATGATTAACT TAGACACAACATCGCTGAAACCAATAAAGTGGGAGTGCATGATTGTTGATGAAGGTCATCGTCTAAAAAATAAGGACTCAAAATTGTTTCTCTCCATGAA GCAGTACTATAGTAACCATCGTGTGCTTTTGACTGGAACCCCTCTTCAGAACAATCTGGATGAACTTTTCATGCTCATGCATTTCCTTGATGCTGGGAAG TTTGCGAGTTTAGAAGAGTTCCAAGAGGAGTTTAAGGATATAAATCAAGAGGAGCAGATATCGAGACTTCATAAAATGTTGGCTCCCCATCTCCTTAGAA GGGTGAAGAAGGATGTCATGAAGGAGCTACCTCCAAAGAAGGAACTCATTCTACGTGTTGAACTAAGTAGTAAGCAGAAGGAATATTACAAGGCCATTCT GACTCGTAACTATCAAATACTGACTCGACGTGGCGGTGCACAGATTTCTCTTATCAATGTGGTTATGGAATTGCGCAAACTCTGTTGTCATCCTTATATG TTAGAAGGAGTGGAACCAGATATAGAAGACACCAATGAATCTTTCAAGCAGCTCGTGGAAACTTCTGGGAAATTGCAACTGTTGCACAAAATGATGGTGA GACTTAAAGAACAAGGACATAGAGTTCTCATTTACTCACAATTTCAGCACATGCTGGACCTACTGGAAGATTACTGCACTCATAAGAAATGGACATATGA ACGGATAGATGGAAAGGTTGGTGGAGCTGAGAGACAAATACGCATAGATCGATTTAATGCCAAAAATTCTTCAAGATTTTGCTTTCTTCTCTCAACTAGA GCTGGAGGACTGGGAATAAATCTTGCAACTGCTGATACAGTTATTATATATGATAGTGATTGGAATCCTCATGCTGATCTTCAAGCAATGGCTAGGGCAC ATCGACTTGGGCAAACCAACAAGGTAATGATTTATAGGCTCATAACCCGAGGAACTATTGAGGAACGGATGATGCAGATGACTAAGAAGAAAATGGTTTT AGAGCACCTTGTTGTTGGGAGGCTGAAGGCACAAAATATTAACCAAGAAGAGCTAGATGACATCATAAGATATGGTTCAAAGGAGCTTTTTGCTGATGAG AATGATGAAGCAGGAAAATCACGTCAAATTCACTATGACGATGCTGCTATACAGCGATTACTTGACCGCGAACAAATTGGAGATGAAGAAACGTCATTGG ATGATGAAGAGGAAGATGGATTTTTAAAGGCATTTAAGGTTGCAAATTTTGAGTATATTGACGAAGCAGAGGCTGCAGCAGAGAAGGAAGCTCAAAAGGC AGCAATGGAAACTAAAACTACCATAAGCAATTCCGAAAAAACAAACTATTGGGAGGACTTGCTAAAAGACAGTTATGAAGTGCACAAAATCGAGGAGTCT AATGCTTTGGGCAAAGGAAAGAGAAGCCGTAAGCAGATGGTCTCTGTTGAAGAAGATGACCTTGCTGGTCTAGAAGATGTAAGCTCTGATGGCGAGGATG ATAACTATGAAGCTGAGCTGACTGATGGTGAAACAACTTCATCTGGAATTCAGACATCTGGAATTCAGACATTAAAAAGGCCTTATAAGAAGAAGGGTCG AGTGGATAATATGGAGCCAATTCCTCTGATGGAAGGTGAAGGTAGATCATTTAGAGTATTGGGTTTTAATCAAAATCAGAGGGCTGCATTTGTACAAATT TTGATGAGGTATGGGGTCGGAGACTATGACTGGAAGGAGTTTGCCCCTCGTTTGAAACAGAAGACATATGAAGAAGTAGAAAATTATGGAAGATTATTCT TGACACATATAGCAGAAGATCTATCTGACTCCCCTAATTTTTCAGATGGTGTTCCTAAAGAGGGTCTTAGAATACAAGATGTACTTATTAGGATTGCTGT CCTGCTTTTGATAAGGGATAAGGCAAGGTTTGCATCAGAGAACCCAGGCAGCCTCCTTTACACAGATGACATTATGGTCCGCTACCCAGGCCTGAAGAGC GGAAAATTTTGGAAACAAGAGCATGATTCGTTGTTACTTCATGCGGTATTGAAGCATGGGTATGGAAGATGGCAAGCTATTGTTGATGACAAGGACTTAA AGGTTCAAGAAATCATTTGTAAAGAGTTGAATCTTCCTTTTATAAGACTACCTGTCCTTGGACAAGCTGCTTCTCAAGCACAAAACGGTTCTACTTCTAA CATGGATAATGCAGAAGCTCCTAGCACCCAGACACAAGCAAATGGTACTGGAAATGTAGCAGCAGCTGATGTTGCTCATGGAACAACTGATGTTGCAAAT CAAGCACAGTTATATCAAGATTCATCTATCTTATTTCATTTTAGAGATATGCAGAGACGACAGGTAGAGTTCATTAAGAAAAGAGTGCTTCTTTTGGAGA GAGGACTTTACGCAGAGTACCAGAAAGAATACTTTGGTGGTGATATAAAAGCAAATGAGATTACAAGTGAAGAGGCTGATTGTGAAACAATGGCGGCTGA CAGATCAAGTTTAGGCTCCATAGAGATTAGTGCTCAAATGATTGACCAGTTGCCTCGAATGGAATCAATTGCATTAGAAGAAATTTCAGCAGCTGCTTGT GATGACAATCCCGATAGATTGGCATTACCTCAGCTTTATAACAAGATGTGCACGGTGTTGGAGCAAAACATTCATGAATCAATTCAGATATCCTTGACCA ACCAACCTGCAAGTCTCAAGTTGAGACAGGATCTTCAGCCATTAGAGACGGTTTATGAACAGATAAATCAATTTCTCTCTCCTTCACAACAGAAATCTTC TACTTCAGAACAGGCTACTCTTGGTTCAAGCAAACATGTCCAAGCTGAATCACAGAGCAGTCAGGCAGATTTCCATTCACCATCTGACCAGCTGAAGGAG AATGATGACACCACTGCTGCTACCGAAGTTGTTGAGATGAAAGATGCAACAACAGAGCCAAAATTGCAAGGAACCATTGCATTATCAAACGAAGAACTAG TTAAAGAAACAAGTAAATCTCCTAGTGATTCTCCACCTTCTGCATGCCCAGTTACTCCTCCAAAAGAACCAACTTGTTCACCAGGGACAACTGAAAAGGA TGTGGGAATGGTCGATATGAATAATGAAAATGACACCCAACACTGA
AA sequence Show only first row Show all	>Potri.018G021100.2 pacid=42801776 polypeptide=Potri.018G021100.2.p locus=Potri.018G021100 ID=Potri.018G021100.2.v4.1 annot-version=v4.1 MTTPFKTEQCNKMNSKEMSSLVERLRVRSERRPIYNLDESDDDADFVSGKAKKPQEKIERFVRDDAKEDSCQACGESENLLNCETCTYAYHPKCLLPPLK APFPSNWRCPECVSPLNDIDKLLDTEMRPTVADDSDASKLGSKQIFVKQYLVKWKGLSYLHCTWVPEREFLKAFKSNPRLKTKVNNFNRQMASNNNSEDD FVAIRPEWTTVDRILACRGVEGEKEYLVKYKELPYDECYWEFESDVSTFQPEIERFNRIQSRSHKPSKQKSSLQDATDSKKKSKEFQQYEHSPEFLSGGS LHPYQLEGLNFLRFSWSKQTHVILADEMGLGKTIQSIAFLASLFEEGISHHLVVAPLSTLRNWEREFATWAPQMNVVMYVGSAQARAVIREYEFYYPKKH KKIKKKKSGQVVTERKQDRIKFDVLLTSYEMINLDTTSLKPIKWECMIVDEGHRLKNKDSKLFLSMKQYYSNHRVLLTGTPLQNNLDELFMLMHFLDAGK FASLEEFQEEFKDINQEEQISRLHKMLAPHLLRRVKKDVMKELPPKKELILRVELSSKQKEYYKAILTRNYQILTRRGGAQISLINVVMELRKLCCHPYM LEGVEPDIEDTNESFKQLVETSGKLQLLHKMMVRLKEQGHRVLIYSQFQHMLDLLEDYCTHKKWTYERIDGKVGGAERQIRIDRFNAKNSSRFCFLLSTR AGGLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLITRGTIEERMMQMTKKKMVLEHLVVGRLKAQNINQEELDDIIRYGSKELFADE NDEAGKSRQIHYDDAAIQRLLDREQIGDEETSLDDEEEDGFLKAFKVANFEYIDEAEAAAEKEAQKAAMETKTTISNSEKTNYWEDLLKDSYEVHKIEES NALGKGKRSRKQMVSVEEDDLAGLEDVSSDGEDDNYEAELTDGETTSSGIQTSGIQTLKRPYKKKGRVDNMEPIPLMEGEGRSFRVLGFNQNQRAAFVQI LMRYGVGDYDWKEFAPRLKQKTYEEVENYGRLFLTHIAEDLSDSPNFSDGVPKEGLRIQDVLIRIAVLLLIRDKARFASENPGSLLYTDDIMVRYPGLKS GKFWKQEHDSLLLHAVLKHGYGRWQAIVDDKDLKVQEIICKELNLPFIRLPVLGQAASQAQNGSTSNMDNAEAPSTQTQANGTGNVAAADVAHGTTDVAN QAQLYQDSSILFHFRDMQRRQVEFIKKRVLLLERGLYAEYQKEYFGGDIKANEITSEEADCETMAADRSSLGSIEISAQMIDQLPRMESIALEEISAAAC DDNPDRLALPQLYNKMCTVLEQNIHESIQISLTNQPASLKLRQDLQPLETVYEQINQFLSPSQQKSSTSEQATLGSSKHVQAESQSSQADFHSPSDQLKE NDDTTAATEVVEMKDATTEPKLQGTIALSNEELVKETSKSPSDSPPSACPVTPPKEPTCSPGTTEKDVGMVDMNNENDTQH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.018G021100 [exp]	0	1	PKL.1
AT4G00450		CCT, CRP	CRYPTIC PRECOCIOUS, CENTER CIT...		Potri.014G084500 [exp]	2.44	0.8231
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.012G137500 [exp]	2.44	0.8316
AT4G15890			binding (.1)		Potri.010G013300 [exp]	2.82	0.7982
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	4.58	0.7569	Pt-APP.2
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.008G009100 [exp]	5.74	0.7448
AT5G46070			Guanylate-binding family prote...		Potri.004G049400 [exp]	8.83	0.7508
AT2G48060			unknown protein		Potri.014G137200 [exp]	11.48	0.7713
AT1G08060		MOM1, MOM	MORPHEUS MOLECULE 1, MORPHEUS ...		Potri.005G010133 [exp]	13.41	0.8022
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Potri.018G118800 [exp]	15.68	0.8028
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.014G135800 [exp]	15.81	0.7354	PP1.6

Compare expression of checked genes

Potri.018G021100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.