Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31985 99 / 1e-29 Ribosomal protein L39 family protein (.1) AT3G02190 94 / 6e-28 Ribosomal protein L39 family protein (.1) AT2G25210 86 / 1e-24 Ribosomal protein L39 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G112301 [exp] 104 / 6e-32 AT4G31985 98 / 1e-29 Ribosomal protein L39 family protein (.1) Potri.006G260500 [exp] 104 / 6e-32 AT4G31985 98 / 1e-29 Ribosomal protein L39 family protein (.1) Potri.006G260837 [exp] 104 / 6e-32 AT4G31985 98 / 1e-29 Ribosomal protein L39 family protein (.1) Potri.006G188500 [exp] 104 / 6e-32 AT4G31985 98 / 1e-29 Ribosomal protein L39 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002220 [exp] 98 / 4e-29 ND 99 / 1e-29 Lus10019065 [exp] 97 / 1e-28 AT4G31985 100 / 2e-29 Ribosomal protein L39 family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00832 [poplar] [flax] Ribosomal_L39 Ribosomal L39 protein
Representative CDS sequence Show only first row Show all	>Potri.018G022100.1 pacid=42801610 polypeptide=Potri.018G022100.1.p locus=Potri.018G022100 ID=Potri.018G022100.1.v4.1 annot-version=v4.1 ATGCCGTCACACAAGACATTTAGGATCAAGAAGAAACTAGCAAAGAAGATGAGGCAAAACAGGCCTATCCCTCATTGGATTCGCATGAGAACAGACAACA CTATCAGGTACAACGCCAAGCGCAGGCACTGGAGAAGGACTAAGCTTGGATTCTGA
AA sequence Show only first row Show all	>Potri.018G022100.1 pacid=42801610 polypeptide=Potri.018G022100.1.p locus=Potri.018G022100 ID=Potri.018G022100.1.v4.1 annot-version=v4.1 MPSHKTFRIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31985			Ribosomal protein L39 family p...		Potri.018G022100 [exp]	0	1
AT5G56670			Ribosomal protein S30 family p...		Potri.015G084700 [exp]	2.00	0.9259	RPS30.1
AT5G56670			Ribosomal protein S30 family p...		Potri.014G147200 [exp]	2.82	0.9230
AT4G31985			Ribosomal protein L39 family p...		Potri.006G260837 [exp]	5.00	0.9140
AT4G39200			Ribosomal protein S25 family p...		Potri.004G157200 [exp]	7.54	0.8912
AT3G52040			unknown protein		Potri.001G262000 [exp]	7.93	0.8614
AT3G61110		ARS27A	ribosomal protein S27 (.1)		Potri.006G192900 [exp]	14.49	0.8900
AT5G09510			Ribosomal protein S19 family p...		Potri.010G076900 [exp]	14.69	0.9035	RPS15.2
AT5G02610			Ribosomal L29 family protein ...		Potri.008G048800 [exp]	17.32	0.9188	RPL35.1
AT3G11940		AML1, ATRPS5A	ARABIDOPSIS MINUTE-LIKE 1, rib...		Potri.006G197700 [exp]	18.43	0.9146	RPS5.2
AT5G56670			Ribosomal protein S30 family p...		Potri.012G086600 [exp]	21.81	0.8929	RPS30.2

Compare expression of checked genes

Potri.018G022100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.