Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-AAT2.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G31990 800 / 0 AAT3, ATAAT1, ASP5 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) AT5G19550 469 / 2e-164 AAT2, ASP2 aspartate aminotransferase 2 (.1) AT5G11520 466 / 3e-162 YLS4, ASP3 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) AT1G62800 421 / 4e-145 ASP4 aspartate aminotransferase 4 (.1.2) AT2G30970 405 / 1e-138 ASP1 aspartate aminotransferase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G260200 [exp] 904 / 0 AT4G31990 801 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Potri.018G082500 [exp] 485 / 1e-170 AT5G19550 736 / 0.0 aspartate aminotransferase 2 (.1) Potri.006G241600 [exp] 478 / 6e-167 AT5G11520 769 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.006G241500 [exp] 435 / 1e-150 AT5G11520 652 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Potri.014G143300 [exp] 394 / 2e-134 AT2G30970 725 / 0.0 aspartate aminotransferase 1 (.1.2) Potri.006G107100 [exp] 386 / 4e-131 AT2G30970 632 / 0.0 aspartate aminotransferase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001938 [exp] 837 / 0 AT4G31990 790 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10001753 [exp] 576 / 0 AT4G31990 540 / 0.0 ASPARTATE AMINOTRANSFERASE DEFICIENT 3, aspartate aminotransferase 5 (.1.2.3.4) Lus10043222 [exp] 479 / 5e-168 AT5G11520 724 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10022137 [exp] 479 / 3e-167 AT5G11520 763 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10011101 [exp] 476 / 9e-167 AT5G11520 719 / 0.0 YELLOW-LEAF-SPECIFIC GENE 4, aspartate aminotransferase 3 (.1) Lus10029796 [exp] 403 / 6e-138 AT2G30970 749 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10020720 [exp] 402 / 2e-137 AT2G30970 753 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10025252 [exp] 340 / 3e-113 AT2G30970 557 / 0.0 aspartate aminotransferase 1 (.1.2) Lus10000181 [exp] 196 / 5e-58 AT2G30970 347 / 2e-117 aspartate aminotransferase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0061 [poplar] [flax] PLP_aminotran PF00155 [poplar] [flax] Aminotran_1_2 Aminotransferase class I and II
Representative CDS sequence Show only first row Show all	>Potri.018G022200.7 pacid=42802111 polypeptide=Potri.018G022200.7.p locus=Potri.018G022200 ID=Potri.018G022200.7.v4.1 annot-version=v4.1 ATGGCTTCAACAATGATTTCTTTAGCTTCTGCTACTCCTTCTGCTTCACTTTCTGTGCAAGAAACTCTCAAGGGAAAGATGAGGCTTGGAAGTAGTAGTG TGAGTACATTGTTTAACAAGGAGAAAGGCAATCCCTCTATCAAGAAAAAGTCATTTGGCCGGATATCTATGACTGTTGCAGTGAATGTATCCCGTTTCGA GGGTATTGCTATGGCCCCCCCTGATCCTATCCTTGGTGTTTCTGAAGCTTTTAGAGCAGACATAGATGTAAAGAAGCTCAACCTTGGAGTTGGGGCCTAC CGAACTGAAGAGTTACAACCTTATGTGCTTGATGTTGTTAAGAAGGCTGAGAATCTTATGCTGGAGAGGGGAGAAAACAAAGAGTATCTCGCAATCGAAG GTTTGGCTGCATTCAATAAGGTGACTGCAGAGTTACTATTCGGAGCAGACAACCAAGTGATAGAGCAACAAAGAGTTGCAACTGTTCAAGGTCTCTCGGG CACCGGTTCTCTTCGATTAGCTGCAGCTCTCATTGAGCGATATTTTCCTGGAGCGCAAGTTCTGATATCGTCTCCTACTTGGGGTAATCACAAGAATATT TTCAATGATGCAAGAGTTCCATGGTCAGAGTACCGATACTATGATCCCAAAACAGTTGGCTTGGATTTTGAGGGGATGATATCGGACATAAAGGCAGCCC CTGAGGGATCATTTGTGTTGCTACATGGCTGTGCTCACAACCCAACTGGTATTGATCCAACCCCTGAACAATGGGAGAAAATTGCTGATGTCATTCAAGA AAAGAACCATATTCCATTTTTTGATGTTGCCTACCAGGGATTTGCTAGTGGAAGCCTTGATGCAGATGCATCATCAGTGAGGTTGTTTGCTGCACGTGGT ATGGAGCTTCTGGTTGCTCAGTCATACAGCAAAAATTTGGGTTTGTATGCCGAAAGAATTGGGGCGATTAATGTTGTCTGCTCATCAGCTGATGCAGCAG CAAGGGTTAAGAGCCAACTGAAAAGGATTGCCCGACCAATGTACTCAAATCCTCCTGTTCATGGGGCTAGAATTGTTGCTAATGTTGTTGGGGATCCAGC TCTTTTCAATGAATGGAAGGCAGAGATGGAAATGATGGCTGGGAGGATAAAAAATGTGAGACAGAAGCTATTTGACAGTCTCTCTGCAAAAGATAAAAGT GGGAAAGATTGGTCTTTTATACTGAAGCAGATTGGCATGTTTTCCTTCACTGGCTTGAACAAAGCTCAGAGCGATAATATGACCAACAAGTGGCATGTTT ATATGACGAAGGATGGAAGAATATCCTTGGCTGGACTGTCTTTGGCCAAATGTGAATACCTTGCTGATGCAATTATTGACTCCTACCACAATGTCAGTTG A
AA sequence Show only first row Show all	>Potri.018G022200.7 pacid=42802111 polypeptide=Potri.018G022200.7.p locus=Potri.018G022200 ID=Potri.018G022200.7.v4.1 annot-version=v4.1 MASTMISLASATPSASLSVQETLKGKMRLGSSSVSTLFNKEKGNPSIKKKSFGRISMTVAVNVSRFEGIAMAPPDPILGVSEAFRADIDVKKLNLGVGAY RTEELQPYVLDVVKKAENLMLERGENKEYLAIEGLAAFNKVTAELLFGADNQVIEQQRVATVQGLSGTGSLRLAAALIERYFPGAQVLISSPTWGNHKNI FNDARVPWSEYRYYDPKTVGLDFEGMISDIKAAPEGSFVLLHGCAHNPTGIDPTPEQWEKIADVIQEKNHIPFFDVAYQGFASGSLDADASSVRLFAARG MELLVAQSYSKNLGLYAERIGAINVVCSSADAAARVKSQLKRIARPMYSNPPVHGARIVANVVGDPALFNEWKAEMEMMAGRIKNVRQKLFDSLSAKDKS GKDWSFILKQIGMFSFTGLNKAQSDNMTNKWHVYMTKDGRISLAGLSLAKCEYLADAIIDSYHNVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G31990		AAT3, ATAAT1, A...	ASPARTATE AMINOTRANSFERASE DEF...		Potri.018G022200 [exp]	0	1	Pt-AAT2.2
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Potri.006G147300 [exp]	5.65	0.9533
AT1G78630		EMB1473	embryo defective 1473, Ribosom...		Potri.011G106100 [exp]	13.22	0.9458
AT3G52050			5'-3' exonuclease family prote...		Potri.013G125700 [exp]	14.89	0.9465
AT1G52220			unknown protein		Potri.001G184700 [exp]	15.23	0.9495
AT2G33800		EMB3113	EMBRYO DEFECTIVE 3113, Ribosom...		Potri.004G045700 [exp]	16.79	0.9522
AT1G14030			Rubisco methyltransferase fami...		Potri.008G090500 [exp]	19.10	0.9493	RBCMT.1
AT1G64510			Translation elongation factor...		Potri.001G088300 [exp]	21.77	0.9499
AT1G50575			Putative lysine decarboxylase ...		Potri.008G180300 [exp]	22.97	0.9077
AT4G17070			peptidyl-prolyl cis-trans isom...		Potri.014G051300 [exp]	25.69	0.9273
AT5G26110			Protein kinase superfamily pro...		Potri.002G049900 [exp]	26.15	0.9023

Compare expression of checked genes

Potri.018G022200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.