Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32000 402 / 1e-137 Protein kinase superfamily protein (.1.2) AT2G25220 402 / 2e-137 Protein kinase superfamily protein (.1.2) AT5G11020 402 / 2e-137 Protein kinase superfamily protein (.1) AT1G80640 320 / 1e-105 Protein kinase superfamily protein (.1.2) AT1G54820 233 / 1e-71 Protein kinase superfamily protein (.1) AT3G58690 226 / 2e-69 Protein kinase superfamily protein (.1) AT3G24790 210 / 9e-64 Protein kinase superfamily protein (.1) AT1G61860 209 / 5e-63 Protein kinase superfamily protein (.1) AT4G13190 208 / 1e-62 Protein kinase superfamily protein (.1) AT4G02010 214 / 7e-62 Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G260100 [exp] 686 / 0 AT5G11020 434 / 3e-150 Protein kinase superfamily protein (.1) Potri.001G048500 [exp] 394 / 3e-134 AT2G25220 465 / 1e-162 Protein kinase superfamily protein (.1.2) Potri.003G179500 [exp] 389 / 1e-132 AT2G25220 424 / 2e-147 Protein kinase superfamily protein (.1.2) Potri.014G143100 [exp] 238 / 8e-74 AT3G58690 573 / 0.0 Protein kinase superfamily protein (.1) Potri.005G036600 [exp] 237 / 3e-73 AT1G54820 434 / 4e-150 Protein kinase superfamily protein (.1) Potri.013G025700 [exp] 231 / 6e-71 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.001G421400 [exp] 213 / 2e-64 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.006G152000 [exp] 219 / 1e-62 AT5G56890 846 / 0.0 Protein kinase superfamily protein (.1) Potri.002G194700 [exp] 214 / 5e-62 AT4G02010 958 / 0.0 Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001937 [exp] 488 / 4e-171 AT4G32000 468 / 6e-164 Protein kinase superfamily protein (.1.2) Lus10041026 [exp] 484 / 5e-170 AT4G32000 480 / 4e-169 Protein kinase superfamily protein (.1.2) Lus10005345 [exp] 390 / 6e-132 AT2G25220 404 / 2e-138 Protein kinase superfamily protein (.1.2) Lus10002328 [exp] 355 / 1e-119 AT4G32000 436 / 6e-152 Protein kinase superfamily protein (.1.2) Lus10026091 [exp] 356 / 2e-119 AT1G80640 435 / 5e-151 Protein kinase superfamily protein (.1.2) Lus10029948 [exp] 238 / 1e-72 AT1G54820 469 / 1e-162 Protein kinase superfamily protein (.1) Lus10004461 [exp] 231 / 6e-70 AT1G54820 465 / 4e-161 Protein kinase superfamily protein (.1) Lus10019621 [exp] 216 / 1e-65 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 216 / 2e-65 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10040050 [exp] 214 / 4e-65 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.018G022300.1 pacid=42800916 polypeptide=Potri.018G022300.1.p locus=Potri.018G022300 ID=Potri.018G022300.1.v4.1 annot-version=v4.1 ATGAAGCTTCTTCATCTTGTTCTTGTTCCTCAAACAGTTCCCATTTGGTTTTTTCATTTGTGTCTAGTAGTAGTTCATGCCGTACAAGAAGACCCACCTG TCCCTTCACCATCTCCCTCTCTCATTTCTCCTATTTCAACTTCAATGACTGCCTTCTCTCCAGGGGTTGAATCGGAAATGGGAATCAAAGACCACCACCA GCATGATGACCTCCACAGGAAAATAATCTTGTTGCTCATTGTTGCTTGTTGCATACTTGTTATCATCCTTCTTTCTTTGTGTTCTTGTTTCATTTACTAT AAGAAGTCCTCACAAAAGAAAAAAGCTACTCGGTGTTCAGATGTGGAGAAAGGGCTTTCATTGGCACCATTTTTGGGCAAATTCAGTTCCTTGAAAATGG TTAGTAATAGGGGATCTGTTTCATTAATTGAGTATAAGATACTAGAGAAAGGAACAAACAATTTTGGCGATGATAAATTGTTGGGAAAGGGAGGATTTGG ACGTGTATATAAGGCTGTAATGGAAGATGACTCAAGTGCTGCAGTCAAGAAACTAGACTGCGCAACTGATGATGCGCAGAGAGAATTTGAGAATGAGGTG GATTTGTTAAGCAAATTTCACCATCCAAATATAATTTCTATTGTGGGTTTTAGTGTTCATGAGGAGATGGGGTTCATTATTTATGAGTTAATGCCAAATG GGTGCCTTGAAGATCTACTGCATGGACCTTCTCGTGGATCTTCACTAAATTGGCATTTAAGGTTGAAAATTGCTCTTGATACAGCAAGAGGATTAGAATA TCTGCATGAATTCTGCAAGCCAGCAGTGATCCATAGAGATCTGAAATCATCGAATATTCTTTTGGACGCCAACTTCAATGCCAAGCTGTCAGATTTTGGT CTTGCTGTAGCTGATAGCTCTCATAACAAGAAAAAGCTCAAGCTTTCAGGCACTGTGGGTTATGTAGCCCCAGAGTATATGTTAGATGGTGAATTGACGG ATAAGAGTGATGTCTATGCTTTTGGAGTTGTGCTTCTAGAGCTTCTATTAGGAAGAAGGCCTGTAGAAAAACTGACACCAGCTCATTGCCAATCTATAGT AACATGGGCCATGCCTCAGCTCACTAACAGAGCTGTGCTTCCAACCATTGTGGATCCTGTGATCAGAGATTCAGTAGATGAGAAGTACTTGTTCCAGGTT GCAGCAGTAGCCGTGTTGTGTATTCAACCAGAGCCAAGTTACCGCCCTCTCATAACAGATGTTGTGCACTCTCTCGTCCCATTAGTTCCTCTTGAGCTTG GAGGGACACTAAGAGTTCCACAGCCTACAACTTCCAGAGGTCAACGACAAGGCGCATCAAAGAAACTGTTTTTGGATGGTGCTGCCTCTGCTTAA
AA sequence Show only first row Show all	>Potri.018G022300.1 pacid=42800916 polypeptide=Potri.018G022300.1.p locus=Potri.018G022300 ID=Potri.018G022300.1.v4.1 annot-version=v4.1 MKLLHLVLVPQTVPIWFFHLCLVVVHAVQEDPPVPSPSPSLISPISTSMTAFSPGVESEMGIKDHHQHDDLHRKIILLLIVACCILVIILLSLCSCFIYY KKSSQKKKATRCSDVEKGLSLAPFLGKFSSLKMVSNRGSVSLIEYKILEKGTNNFGDDKLLGKGGFGRVYKAVMEDDSSAAVKKLDCATDDAQREFENEV DLLSKFHHPNIISIVGFSVHEEMGFIIYELMPNGCLEDLLHGPSRGSSLNWHLRLKIALDTARGLEYLHEFCKPAVIHRDLKSSNILLDANFNAKLSDFG LAVADSSHNKKKLKLSGTVGYVAPEYMLDGELTDKSDVYAFGVVLLELLLGRRPVEKLTPAHCQSIVTWAMPQLTNRAVLPTIVDPVIRDSVDEKYLFQV AAVAVLCIQPEPSYRPLITDVVHSLVPLVPLELGGTLRVPQPTTSRGQRQGASKKLFLDGAASA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25220			Protein kinase superfamily pro...		Potri.018G022300 [exp]	0	1
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Potri.001G402400 [exp]	1.73	0.9054	Pt-MLO11.1
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.016G093600 [exp]	2.44	0.9086	PGP1.2
AT3G66658		ALDH22A1	aldehyde dehydrogenase 22A1 (....		Potri.008G106000 [exp]	3.31	0.9108	ALDH22.1
AT5G28150			Plant protein of unknown funct...		Potri.005G210800 [exp]	3.87	0.9031
AT3G54030			Protein kinase protein with te...		Potri.016G105800 [exp]	7.48	0.9039
AT2G36910		ATMDR1, ATPGP1,...	P-GLYCOPROTEIN 1, ARABIDOPSIS ...		Potri.006G123900 [exp]	7.74	0.8679	Pt-PGP1.1
AT5G32450			RNA binding (RRM/RBD/RNP motif...		Potri.019G037600 [exp]	9.48	0.8941
AT4G00710		BSK3	BR-signaling kinase 3 (.1)		Potri.002G158400 [exp]	9.79	0.8921
AT2G43200			S-adenosyl-L-methionine-depend...		Potri.007G123500 [exp]	11.48	0.8795
AT3G20020		ATPRMT6	ARABIDOPSIS THALIANA PROTEIN A...		Potri.007G000300 [exp]	12.56	0.8346

Compare expression of checked genes

Potri.018G022300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.