Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32020 62 / 3e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G260000 [exp] 173 / 2e-55 AT4G32020 47 / 1e-06 unknown protein Potri.008G198000 [exp] 50 / 1e-07 AT4G02040 56 / 9e-10 unknown protein Potri.010G027500 [exp] 49 / 3e-07 AT4G02040 55 / 1e-09 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005344 [exp] 56 / 6e-10 AT4G32020 66 / 1e-13 unknown protein Lus10019069 [exp] 52 / 2e-08 AT4G02040 64 / 8e-13 unknown protein Lus10041025 [exp] 52 / 2e-08 AT2G25250 60 / 8e-12 unknown protein Lus10001936 [exp] 47 / 1e-06 AT4G32020 57 / 2e-10 unknown protein Lus10001940 [exp] 44 / 1e-05 AT4G32020 62 / 1e-12 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF15365 [poplar] [flax] PNRC Proline-rich nuclear receptor coactivator motif
Representative CDS sequence Show only first row Show all	>Potri.018G022400.1 pacid=42800650 polypeptide=Potri.018G022400.1.p locus=Potri.018G022400 ID=Potri.018G022400.1.v4.1 annot-version=v4.1 ATGGGAGTTCTTGTTGTAAACCCTCAAGATTGCCTGAAAAATCCCTTACAATCACAACCACAACGGATGAGGTTCACACGGAACCCTAACCTCAACAACC CCCGCCCAAACCGGGCACAACCCAACCGCCGAAAATGGAGTCCCAACTCATCGCCACCTCCACGCGCCGCTGTACCCAAGAACAACAGCAGCAACCTTGT TATGGGACAAGTCAAGATTCTCAAACGAGGCAAAGAAGATTTAATCGAGCCCGGAAAGAAGGATGAGACTCCAAGAGGGAGTCATAACACAGAGGCTGTG AAAAGTGAAGACCTGGGTTTCTTCTCAACCAACAGGCTGGGTCCTGATGCCGTTCTGGTTCCGACTCAGGTCCGACTCACTGAGTCAAAGGACATAGTTA ATGGTTTTTATGCGGGATCGGCTTTTATTACGTCCCCGCCACCCAGCTCTCTTCCTCTACCTGGCTTTTTCACAAAGAAGACAAATAACCCTGTTGCTGT CGATGCAAGCAGTGAGATAATGAAGCTTTTAGGCCTTAGTTTGTAG
AA sequence Show only first row Show all	>Potri.018G022400.1 pacid=42800650 polypeptide=Potri.018G022400.1.p locus=Potri.018G022400 ID=Potri.018G022400.1.v4.1 annot-version=v4.1 MGVLVVNPQDCLKNPLQSQPQRMRFTRNPNLNNPRPNRAQPNRRKWSPNSSPPPRAAVPKNNSSNLVMGQVKILKRGKEDLIEPGKKDETPRGSHNTEAV KSEDLGFFSTNRLGPDAVLVPTQVRLTESKDIVNGFYAGSAFITSPPPSSLPLPGFFTKKTNNPVAVDASSEIMKLLGLSL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32020			unknown protein		Potri.018G022400 [exp]	0	1
AT2G04550		DSPTP1E, IBR5	DUAL SPECIFICITY PROTEIN PHOSP...		Potri.014G160500 [exp]	3.31	0.8393	Pt-IBR5.1
AT5G10810		ATER	ARABIDOPSIS THALIANA ENHANCER ...		Potri.018G017300 [exp]	8.00	0.8378
AT3G62770		ATATG18A	autophagy 18a, Transducin/WD40...		Potri.002G207865 [exp]	9.38	0.8196
					Potri.009G060901 [exp]	10.95	0.8167
AT5G64460			Phosphoglycerate mutase family...		Potri.002G108500 [exp]	12.84	0.8329
AT4G01810			Sec23/Sec24 protein transport ...		Potri.002G187100 [exp]	14.38	0.8365
AT1G01350	C3HZnF		Zinc finger (CCCH-type/C3HC4-t...		Potri.014G097300 [exp]	15.00	0.8144
AT5G06370			NC domain-containing protein-r...		Potri.006G203300 [exp]	16.91	0.8060
AT3G43230			RING/FYVE/PHD-type zinc finger...		Potri.018G064200 [exp]	17.49	0.8124
AT2G17200		DSK2	ubiquitin family protein (.1)		Potri.004G205100 [exp]	23.62	0.7792

Compare expression of checked genes

Potri.018G022400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.