Plant FIBer expression Database

Potri.018G022800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32050 752 / 0 neurochondrin family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032403
[exp]
780 / 0 AT4G32050 645 / 0.0 neurochondrin family protein (.1)
Lus10023067
[exp]
668 / 0 AT4G32050 538 / 0.0 neurochondrin family protein (.1)
Lus10001536
[exp]
156 / 2e-43 AT4G32050 125 / 9e-33 neurochondrin family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF05536 Neurochondrin Neurochondrin
Representative CDS sequence
>Potri.018G022800.1 pacid=42801070 polypeptide=Potri.018G022800.1.p locus=Potri.018G022800 ID=Potri.018G022800.1.v4.1 annot-version=v4.1
ATGGAACAACAGCAGCAACAAACCCCGTCTTTGGACGATTGCTTGAAGCTATTGAAAGGTGAAAGAGATGAGCAACGCCTTGCCGGTCTACTCCTAGTTA
CCAAATTTTGTAATGGAGACGACCTCGTTTCTCTCCGAAAAGTTTACAACGCAGTCGGTGTTCACTTTCTTGACCGACTCTTAAGAACCGGTATGGGTAA
AGGAAGTGTTAGTGGAGGAGATAATAGGGATATGTATCTGCAGTTATCAGTTACAGTTCTGGCTGCATTCTGTCGCGTGCCGGATATTGCTGCATCGAAA
GAAATGGTTTCGAAGATTCCTTTGATTTTGGAAATAATGCCGGAAGTATCAGGTTCACCTGTTCTTGAAGAGTGCTATGAATTTTTATATCTGGTAACAA
CTTCATATGAAGATGGAGCCACAACATTTTATGAATCTGGAGGCATGAAAGTGCTAGCTTCGCAGATGAGTTCTTTGCCTGATGGCTCTCATATGATGGA
GCTGGCGATGAAAATTGTACAGTCTATACTAAGCAGGCTGTCTCAGGATGTTGTTACCAATACCTATGTGTCAGAGCTATCAATGATGGTGGCCACAGTA
GCAAGACAATTTGCTTTGTTGCACAATTCTCTTAAATTTGAAGCACTTCATCTACTATCCGAGATCTTCTCATCAAAGTATTCAAAACCACTTTGTGATG
CATTGTGTGCAATGGCTGGCAACAAATGGCCAGATCATATGCGTGCTGGGATTGTGGCTATTTTACAGAATCGTGTAGAACCTGCTGAAAAGCTTCATGC
CCTTATTTTGGCTGAATCTGTGATATCTATAATGGGGGAAGGCTGGCTGCTTGGTCAGCCAAACTTACCTGATTTACCAGACTCCATACCAGCTGACCGG
TGTTTTCTGCTTGTCTTGGAGTCTGCAAGGGTTGAAGTTGCTGTTTTGCTGAATGATCTGGCCTATTTGAAATATGAAGCTTCCAAGGATACGTCAACAA
CTGTTGAAACTATTCTCTTAAAGCAAAGAAATGTGGCTATTGCCTTTTCCTTGGTCGAGAGGGTAATCAAATTGACGTCAACCATGGATGAAGTTGAAGG
GAGTATTATTGGTGAAAGAACTTTAATAAAGGTGATCAATGGGCTTAACGAGACAATTAATGTAGTTCTAGAGTATCTAGAAGATGCCAAGGAGCATGGG
CAAAAGAAAGGAAATGATCTTCTTGCATCTGTACGGGTAGTTGGGAGCTATCTTGCAGAAACACCCAATGCATGCAAAGAGAAAGTTAGAGAGCTTTTGG
ACTATATGCTGACAATTGAAGGTGAAGATGAACCAAGCCCTTTTCACTCTATATCTTTTCTACTTCCAATGATGTGTCAAATTACAATGGATATTGAAGG
GTGTGAAGCTTTGATTTCTTCTGGAGGTTACAAAGCTGTTGCAGAATGCCTTGTAAAGTTGATTGGACCACATGGCAACATGGTTGTTGATGATGGCTGC
ACCTTCTTGGCATGTGATACAGTATTGAATTTGCTGTTGAAGAAAGAACAAATGCAATTTCGAATGGATGAATCAACCTTCATTGATCTTTTGAAGGCCT
TAGGATATTGGGCAGGGAATGCAAATGACCTTTCTGTTATTATCATGGCTTCAAGCATTTGTGCTCTGATATTTGATTATACATCAGAGGAGACTCTTCT
AAACCATCCCAACCTCGACAACAGCTCCCTCCATAATCTATATAAAATCATTGCAAGAAGTTTGGCTTCTTGTAAGCAGGATATGTCTGATATGGTTAGA
GAAGAAACAGATCTTCTCGAGATTGTTACTTCAGGATTTTCACGGTGGGCACATCGGTTCCCTCGTTTAAGAGAGGCGGCTGAGAGTGCTTAA
AA sequence
>Potri.018G022800.1 pacid=42801070 polypeptide=Potri.018G022800.1.p locus=Potri.018G022800 ID=Potri.018G022800.1.v4.1 annot-version=v4.1
MEQQQQQTPSLDDCLKLLKGERDEQRLAGLLLVTKFCNGDDLVSLRKVYNAVGVHFLDRLLRTGMGKGSVSGGDNRDMYLQLSVTVLAAFCRVPDIAASK
EMVSKIPLILEIMPEVSGSPVLEECYEFLYLVTTSYEDGATTFYESGGMKVLASQMSSLPDGSHMMELAMKIVQSILSRLSQDVVTNTYVSELSMMVATV
ARQFALLHNSLKFEALHLLSEIFSSKYSKPLCDALCAMAGNKWPDHMRAGIVAILQNRVEPAEKLHALILAESVISIMGEGWLLGQPNLPDLPDSIPADR
CFLLVLESARVEVAVLLNDLAYLKYEASKDTSTTVETILLKQRNVAIAFSLVERVIKLTSTMDEVEGSIIGERTLIKVINGLNETINVVLEYLEDAKEHG
QKKGNDLLASVRVVGSYLAETPNACKEKVRELLDYMLTIEGEDEPSPFHSISFLLPMMCQITMDIEGCEALISSGGYKAVAECLVKLIGPHGNMVVDDGC
TFLACDTVLNLLLKKEQMQFRMDESTFIDLLKALGYWAGNANDLSVIIMASSICALIFDYTSEETLLNHPNLDNSSLHNLYKIIARSLASCKQDMSDMVR
EETDLLEIVTSGFSRWAHRFPRLREAAESA

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32050 neurochondrin family protein (... Potri.018G022800
[exp]
0 1
AT3G12680 C3HZnF HUA1 ENHANCER OF AG-4 1, floral hom... Potri.010G176300
[exp]
4.47 0.6648 HUA1.2
AT5G64470 TBL12 TRICHOME BIREFRINGENCE-LIKE 12... Potri.001G286100
[exp]
6.55 0.7239
AT3G21090 ABCG15 ATP-binding cassette G15, ABC-... Potri.006G049000
[exp]
18.16 0.7216
AT2G33735 Chaperone DnaJ-domain superfam... Potri.002G103900
[exp]
19.79 0.6673
AT3G12680 C3HZnF HUA1 ENHANCER OF AG-4 1, floral hom... Potri.008G080300
[exp]
20.78 0.6556 Pt-HUA1.1
AT3G19184 B3 AP2/B3-like transcriptional fa... Potri.005G137600
[exp]
25.33 0.5794
AT3G04880 DRT102 DNA-DAMAGE-REPAIR/TOLERATION 2... Potri.005G050600
[exp]
25.76 0.7143 Pt-DRT102.2
Potri.019G040151
[exp]
29.03 0.7163
AT5G43950 Plant protein of unknown funct... Potri.014G193100
[exp]
44.79 0.6665
AT5G63520 unknown protein Potri.015G098800
[exp]
52.74 0.6596

Potri.018G022800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.