Plant FIBer expression Database

Potri.018G022900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25260 703 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
AT5G25250 700 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
AT5G64870 642 / 0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G258900
[exp]
895 / 0 AT5G25260 704 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10001929
[exp]
152 / 4e-40 AT2G25270 457 / 3e-156 unknown protein
Lus10001944
[exp]
112 / 5e-30 AT5G25250 87 / 1e-21 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0433 SPFH PF01145 Band_7 SPFH domain / Band 7 family
Representative CDS sequence
>Potri.018G022900.1 pacid=42801923 polypeptide=Potri.018G022900.1.p locus=Potri.018G022900 ID=Potri.018G022900.1.v4.1 annot-version=v4.1
ATGTATAGAGTTGCTAGTCCGTCCGAGTTTTTGGTGATAACCGGGGTTGGTATCTCTGATATTAAGCTAGCCAAAAAGGGATGGATCCTTCCCGGCCAGT
CATGTACTGTCTTCGACGTTTCACCGGTCAACTACACCTTCGAAGTCCAAGCCATGAGTGCAGAGAAGCTCCCTTTTGTTCTTCCTGCTGTCTTCACTAT
TGGCCCTCGTGTGGATGACGAACAAAGCCTCTTTAAATATGCAAAGCTCATCTCTCGACATGACAAGCTCTCTAACCATGTTAAAGAGCTTGTTCAGGGT
ATCATCGAGGGTGAAACCAGAGTACTTGCTGCTTCCATGACCATGGAAGAGGTTTTCAAAGGAACTAAAGAGTTTAAACAGGAAGTTTTTGAGAAAGTCC
AGCTTGAACTTAATCAGTTTGGATTGTTAATATATAATGCTAATGTTAAACAACTTGTCGACGTTCCTGGGCACGAGTACTTCTCTTACTTGGGTCAAAA
GACTCAAATGGAGGCTGCAAATCAAGCCAGAGTTGATGTAGCAGAAGCGAAAATGAAGGGAGAGGTAGGATCAAAGCAAAGGGAGGGTCAAACTCTGCAA
AATGCGGCGAGAATCGATGCTGAAACGAAGATTATTGCGACGCAAAGGCAAGGAGATGGGAAGAAGGAGGAGATAAAGGTGAAGACTGAGGTTAAGATTT
ATGAGAACCATAGAGAAGCAGAGGTGGCAGAGGCCAATGCTGATTTGGCAAAGAAGAAGGCTGGTTGGTCCAAAGAAGCGCAGGTGGCAGAGGTGGAAGC
AACAAAGGCCGTGTCCCTGAGGGAGGCTGAGTTGCAAAGGGAGGTGGAGAGAATGAATGCTTTGACCAGAACTGAGAAGCTCAAGGCTGAGTTTCTGAGC
CAGGCTAGCGTGGAGTACGAAACCAAGGTTCAAGAAGCAAACTGGGAGCTGTATACGAAGCAGAAAGCAGCAGAAGCAATTCTCTATGAAAAGCAGAAAG
AAGCTGATGCACAAAAAGCAACAGCAGATGCAACATTTTATGCTCGCCAACAAGTTGCTGATGGGGAGCTATATTCAAAGCAAAAGGAAGCTGAAGGACT
CGTTGCACTTGCACAAGCACAAGGAGTCTATATACGCACCCTCTTAGACGCATTAGGCGGCAATTATGCAGCATTAAGAGATTACTTAATGATCAACAGC
GGAATGTTTCAAGAGATTGCTAGGATTAACGCGGATGCAGTTCATGGGTTGCAGCCTAAAATCAGCATCTGGACTAATGGAAACAGTGGCGAGGCTAACG
ATGGAACTGGGGGAGGCAATGCAATGAAGGAGGTTGCTGGGGTTTATAAGATGTTACCACCTTTGTTTAAGACTGTTCAAGACCAGACTGGAATGCTACC
ACCGGCATGGATGGGCACATTGACAGACTCTAGCCACTCTAATGTGAACTGA
AA sequence
>Potri.018G022900.1 pacid=42801923 polypeptide=Potri.018G022900.1.p locus=Potri.018G022900 ID=Potri.018G022900.1.v4.1 annot-version=v4.1
MYRVASPSEFLVITGVGISDIKLAKKGWILPGQSCTVFDVSPVNYTFEVQAMSAEKLPFVLPAVFTIGPRVDDEQSLFKYAKLISRHDKLSNHVKELVQG
IIEGETRVLAASMTMEEVFKGTKEFKQEVFEKVQLELNQFGLLIYNANVKQLVDVPGHEYFSYLGQKTQMEAANQARVDVAEAKMKGEVGSKQREGQTLQ
NAARIDAETKIIATQRQGDGKKEEIKVKTEVKIYENHREAEVAEANADLAKKKAGWSKEAQVAEVEATKAVSLREAELQREVERMNALTRTEKLKAEFLS
QASVEYETKVQEANWELYTKQKAAEAILYEKQKEADAQKATADATFYARQQVADGELYSKQKEAEGLVALAQAQGVYIRTLLDALGGNYAALRDYLMINS
GMFQEIARINADAVHGLQPKISIWTNGNSGEANDGTGGGNAMKEVAGVYKMLPPLFKTVQDQTGMLPPAWMGTLTDSSHSNVN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25260 SPFH/Band 7/PHB domain-contain... Potri.018G022900
[exp]
0 1
AT3G22060 Receptor-like protein kinase-r... Potri.004G032000
[exp]
1.41 0.9171
AT4G02860 Phenazine biosynthesis PhzC/Ph... Potri.010G175701
[exp]
3.00 0.9046
AT4G02860 Phenazine biosynthesis PhzC/Ph... Potri.010G175700
[exp]
4.69 0.9083
AT4G27220 NB-ARC domain-containing disea... Potri.019G011169
[exp]
4.69 0.8722
AT1G56130 Leucine-rich repeat transmembr... Potri.018G026800
[exp]
7.74 0.9020
AT5G26731 unknown protein Potri.005G000700
[exp]
11.66 0.9027
AT1G21270 WAK2 wall-associated kinase 2 (.1) Potri.009G154600
[exp]
17.46 0.8467
AT1G11330 S-locus lectin protein kinase ... Potri.011G037800
[exp]
19.62 0.8872
AT5G52450 MATE efflux family protein (.1... Potri.010G116700
[exp]
21.49 0.8696
AT5G10530 Concanavalin A-like lectin pro... Potri.001G284200
[exp]
23.23 0.8815

Potri.018G022900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.