Plant FIBer expression Database

Potri.018G023100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G25265 583 / 0 unknown protein
AT2G25260 506 / 0 unknown protein
AT5G13500 455 / 5e-161 unknown protein
AT3G01720 66 / 1e-11 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G258800
[exp]
664 / 0 AT5G25265 577 / 0.0 unknown protein
Potri.001G028100
[exp]
463 / 3e-164 AT5G13500 570 / 0.0 unknown protein
Potri.003G195600
[exp]
444 / 8e-157 AT5G13500 532 / 0.0 unknown protein
Potri.009G070000
[exp]
434 / 8e-153 AT5G13500 515 / 0.0 unknown protein
Potri.001G275600
[exp]
434 / 2e-152 AT5G13500 543 / 0.0 unknown protein
Potri.001G336400
[exp]
65 / 4e-11 AT3G01720 1215 / 0.0 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041028
[exp]
633 / 0 AT5G25265 618 / 0.0 unknown protein
Lus10005347
[exp]
632 / 0 AT5G25265 612 / 0.0 unknown protein
Lus10009691
[exp]
442 / 6e-156 AT5G13500 541 / 0.0 unknown protein
Lus10036037
[exp]
440 / 4e-155 AT5G13500 542 / 0.0 unknown protein
Lus10014878
[exp]
57 / 1e-08 AT3G01720 1197 / 0.0 unknown protein
Lus10022320
[exp]
56 / 3e-08 AT3G01720 1181 / 0.0 unknown protein
PFAM info
Representative CDS sequence
>Potri.018G023100.2 pacid=42801290 polypeptide=Potri.018G023100.2.p locus=Potri.018G023100 ID=Potri.018G023100.2.v4.1 annot-version=v4.1
ATGGGTTGTGGGAATTTCTTCTTTACAGTACTAATAACCTTGTCAGTAGCCCTTATAACATACAACATCCTTATATCAGCAAACGCACCACTTAAACAAG
ACTTACCAGGTCCATCATCAAGATCAACACTTTTGGTTGACCCAGTAATCAAGATGCCATTAGAAAGATCAAGAAGATCAAGTTTTGGTAAAAAGAGACT
GTTTCATACAGCTGTGACAGCTTCTGATTCTGTGTATAATACTTGGCAGTGTAGGGTAATGTATTATTGGTACAAGAAGCATAAAGATGGACCCAATAGT
GAGATGGGAGGGTTCACTAGGATCTTGCATTCTGGAAAGCCTGATAAGTTTATGGAGGAAATCCCAACTTTTATAGCACAGCCCTTGCCTGCTGGGATGG
ATCAGGGCTATATAGTTCTCAACAGACCTTGGGCATTTGTGCAATGGCTTCAAAAAACAGACATAAAAGAAGATTACATATTGATGGCAGAGCCAGATCA
TATTATTGTTAAGCCCATCCCGAACCTATCTAAAGATGGCCTTGGAGCTGCGTTTCCTTTCTTTTACATTGAACCAAAAAAGTATGAGTCTGTCCTCCGA
AAGTACTTCCCTGAGGATAAGGGACCAATAACAAACATCGACCCCATAGGAAATTCTCCTGTCATTGTTGGGAAGGAATCTCTTAAGAAGATTGCTCCCA
CTTGGATGAATGTCTCCTTGGCAATGAAAAAGGATCCCGAGACAGATAAAGCTTTTGGCTGGGTGCTTGAAATGTATGGTTATGCTGTTTCATCTGCTCT
ACATGGCGTTGGCAACATCCTGTACAAGGACTTCATGATTCAGCCTCCTTGGGATACAGAAGTTGGCAAGAAGTTCATAATTCATTACACTTACGGATGT
GACTATGATATGAAGGGTAAATTAACCTACGGAAAGATTGGAGAATGGAGGTTTGACAAGAGATCTTATGATACCGTTATACCCCCAAGAAACCTTCCCT
TGCCTCCACCGGGTGTTCCAGAGAGTGTGGTTACTCTGGTGAAAATGGTGAATGAAGCTACTGCAAACATTCCAAATTGGGGATCCTAA
AA sequence
>Potri.018G023100.2 pacid=42801290 polypeptide=Potri.018G023100.2.p locus=Potri.018G023100 ID=Potri.018G023100.2.v4.1 annot-version=v4.1
MGCGNFFFTVLITLSVALITYNILISANAPLKQDLPGPSSRSTLLVDPVIKMPLERSRRSSFGKKRLFHTAVTASDSVYNTWQCRVMYYWYKKHKDGPNS
EMGGFTRILHSGKPDKFMEEIPTFIAQPLPAGMDQGYIVLNRPWAFVQWLQKTDIKEDYILMAEPDHIIVKPIPNLSKDGLGAAFPFFYIEPKKYESVLR
KYFPEDKGPITNIDPIGNSPVIVGKESLKKIAPTWMNVSLAMKKDPETDKAFGWVLEMYGYAVSSALHGVGNILYKDFMIQPPWDTEVGKKFIIHYTYGC
DYDMKGKLTYGKIGEWRFDKRSYDTVIPPRNLPLPPPGVPESVVTLVKMVNEATANIPNWGS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G25265 unknown protein Potri.018G023100
[exp]
0 1
AT2G03640 Nuclear transport factor 2 (NT... Potri.008G096700
[exp]
1.73 0.7654
AT2G36530 ENO2, LOS2 LOW EXPRESSION OF OSMOTICALLY ... Potri.015G131100
[exp]
4.35 0.7876
AT1G59650 CW14 Protein of unknown function (D... Potri.008G190500
[exp]
27.56 0.6712
AT5G19630 alpha/beta-Hydrolases superfam... Potri.003G212400
[exp]
28.12 0.7488
AT1G33470 RNA-binding (RRM/RBD/RNP motif... Potri.013G094400
[exp]
35.94 0.6975
AT5G60860 AtRABA1f RAB GTPase homolog A1F (.1) Potri.011G061300
[exp]
37.86 0.7489 Pt-RAB11.12
AT2G44190 EMB3116, EDE1, ... QWRF domain containing 5, EMBR... Potri.006G000400
[exp]
48.09 0.7464
AT3G19940 Major facilitator superfamily ... Potri.005G090700
[exp]
67.08 0.7191
AT5G42570 B-cell receptor-associated 31-... Potri.004G007900
[exp]
80.46 0.7229
AT5G51840 unknown protein Potri.012G132832
[exp]
85.89 0.7189

Potri.018G023100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.