Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25270 596 / 0 unknown protein AT2G12400 556 / 0 unknown protein AT1G80540 407 / 1e-136 unknown protein AT1G71110 393 / 9e-131 unknown protein AT5G67550 76 / 3e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258700 [exp] 915 / 0 AT2G25270 590 / 0.0 unknown protein Potri.018G120200 [exp] 603 / 0 AT2G12400 596 / 0.0 unknown protein Potri.006G060600 [exp] 593 / 0 AT2G12400 579 / 0.0 unknown protein Potri.010G115500 [exp] 387 / 2e-128 AT1G71110 646 / 0.0 unknown protein Potri.007G132601 [exp] 145 / 2e-37 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 141 / 5e-36 AT5G67550 182 / 3e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001945 [exp] 709 / 0 AT2G25270 650 / 0.0 unknown protein Lus10008028 [exp] 565 / 0 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 560 / 0 AT2G12400 616 / 0.0 unknown protein Lus10001929 [exp] 511 / 6e-177 AT2G25270 457 / 3e-156 unknown protein Lus10013492 [exp] 412 / 3e-138 AT1G71110 645 / 0.0 unknown protein Lus10038102 [exp] 393 / 2e-131 AT2G25270 468 / 5e-161 unknown protein Lus10034641 [exp] 365 / 9e-120 AT1G71110 587 / 0.0 unknown protein Lus10007962 [exp] 352 / 2e-115 AT1G71110 578 / 0.0 unknown protein Lus10014341 [exp] 308 / 2e-98 AT2G25270 352 / 7e-116 unknown protein Lus10026050 [exp] 280 / 6e-88 AT2G25270 328 / 4e-107 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G023200.1 pacid=42801856 polypeptide=Potri.018G023200.1.p locus=Potri.018G023200 ID=Potri.018G023200.1.v4.1 annot-version=v4.1 ATGTTATGTCACGGGTTACTGTCATGTACTCTTCTTCTGCTCACCTTTGTCTTCTTTACTTCTTCAGCATCCGTTCCCCTCTCACATGGTGCTTCTGTTC CCTTCCCTACCTTCTCTGCTCTACCCCCTGCTGTGGCAGGGAGAGCAGATGAAGCGAAGTATGAAATGGAGTTCTCATGGGGGACAAGGAGGCCTGTGGT GGAGGCACCCATCGGTGAACCTGTTGATAACTCACCAGTACTGGTGTTAGCTCCAAAGAGGACTTACAGAAAAGACCCTCTTAATGATTTCAAAAGATAC ACTGGAGGATGGAATATCAGTGATCGTCATTACTGGGCTTCTGTAGGTTTCACTGCAGCTCCTCTGTTTGCTATTGCTGCAGTCTGGTTCCTGGTATTTG GGCTGTGCTTACTCTTTGGTTGCCTTTGTCATTTCTGTTGCAAAAGGCAGCGCTATGGCTACTCTCAAACAGCTTATGCTCTCTCCCTCGTTTTCCTCAT TCTCTTCAGCATTTGTGCTATGATTGGATGTGTTGTTCTATATACTGCTCAGGAAAGATTTCACAAAAGCACAACAGAAACTTTGGAGTATGTTGTGAAT CAGGCAGACACCACAGTCGATAAACTAAGGGCTGTGTCAGATTTTATTGCTTCAGCCAAGCTAGTTGGAGTTGATGAAGTTTTTCTACCTTCTAATGTCC AAACTGATATTGACCAGATTGGCACAAGAATTAATTCTTCTGCTAGTGTCCTTGCTGACAAAACAGTGGATAATTCAGAAGACATAAAAGATCTCCTGGA TTCTGTGAGAGTGGCACTGATTACTACTGCTGCTATTATGCTTCTCCTAACATTTCTTGGATTCTTGTTCTCAATTTTCGGCATGCAGTTCCTGGTGTAC ATCCTGGTCATCGTTGGATGGATTCTTGTTGCTGGAACATTCATTTTGTGTGGCACATTCCTTCTTCTCCACAACGTGGCTGGAGATACTTGTGTTGCTA TGGATCATTGGGTGCACAACCCCACTGCTCATACTGCTTTAGACGATATTCTGCCCTGTGTGGACCAAGCAACTACCCAAGATACTTTGATAAAGAGCAA GGAAATCACTTCCCAGCTTGTAGAAGTGGTCAACCAGGTCATCACTAATGTTTCTAATCTCAACTTCTCCCCCAACTTCAAACCAATGTACATCAACCAA TCTGGTCCGTTGGTGCCAATACTCTGCAACCCATTTTATGCCGACTTGACGATTCGGCCTTGCAGTGCTGGTGAGGTGGACTTGACCAATGCTACACAGG TATGGAGTAGCTATGTGTGTCAGGTTTCACCAAGCGGGATATGTGCTACGACAGGACGTTTGACCCCTGCATTCTACAGCCAAATGTCAGCTGCAATAAA TGTGAGCTATGGATTGAATAATTATGCTCCTTTCCTGATTGAGCTAGGAGACTGCACTTTTGCAAGGGAAACATTCAGTGACATATACAAGGATCATTGT CCAAGTCTCAGGAGATACAGTAGATGGATCTACATAGGTTTGGTGATGGTCTCTACTGCAGTTATGCTTTCTCTAATCTTCTGGGTCATATATGGTAGAG AAAGGCGGCACCGTGTGTATTCCAAGCAGCTGGTGTCTGAATCAGCACAAGGTTCGGAAAGGGAAAAAAGTTCCTGA
AA sequence Show only first row Show all	>Potri.018G023200.1 pacid=42801856 polypeptide=Potri.018G023200.1.p locus=Potri.018G023200 ID=Potri.018G023200.1.v4.1 annot-version=v4.1 MLCHGLLSCTLLLLTFVFFTSSASVPLSHGASVPFPTFSALPPAVAGRADEAKYEMEFSWGTRRPVVEAPIGEPVDNSPVLVLAPKRTYRKDPLNDFKRY TGGWNISDRHYWASVGFTAAPLFAIAAVWFLVFGLCLLFGCLCHFCCKRQRYGYSQTAYALSLVFLILFSICAMIGCVVLYTAQERFHKSTTETLEYVVN QADTTVDKLRAVSDFIASAKLVGVDEVFLPSNVQTDIDQIGTRINSSASVLADKTVDNSEDIKDLLDSVRVALITTAAIMLLLTFLGFLFSIFGMQFLVY ILVIVGWILVAGTFILCGTFLLLHNVAGDTCVAMDHWVHNPTAHTALDDILPCVDQATTQDTLIKSKEITSQLVEVVNQVITNVSNLNFSPNFKPMYINQ SGPLVPILCNPFYADLTIRPCSAGEVDLTNATQVWSSYVCQVSPSGICATTGRLTPAFYSQMSAAINVSYGLNNYAPFLIELGDCTFARETFSDIYKDHC PSLRRYSRWIYIGLVMVSTAVMLSLIFWVIYGRERRHRVYSKQLVSESAQGSEREKSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25270			unknown protein		Potri.018G023200 [exp]	0	1
AT4G03100			Rho GTPase activating protein ...		Potri.014G135570 [exp]	1.00	0.9446
AT3G19820		CBB1, EVE1, DW1...	ENHANCED VERY-LOW-FLUENCE RESP...		Potri.008G084800 [exp]	2.64	0.9215	DIM.2
AT1G01200		ATRAB-A3, AtRAB...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.014G102200 [exp]	2.82	0.9304
AT4G29360			O-Glycosyl hydrolases family 1...		Potri.002G007300 [exp]	3.16	0.9232
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Potri.002G093100 [exp]	4.24	0.9353	Pt-SAH7.1
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.003G112700 [exp]	5.47	0.9418	Pt-SKU5.1
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.011G092500 [exp]	6.00	0.9222
AT4G38660			Pathogenesis-related thaumatin...		Potri.009G132500 [exp]	6.63	0.9201
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Potri.001G043600 [exp]	7.34	0.9212
AT2G23360			Plant protein of unknown funct...		Potri.001G304200 [exp]	8.06	0.9153

Compare expression of checked genes

Potri.018G023200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.