Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11090 194 / 1e-62 serine-rich protein-related (.1) AT5G25280 187 / 4e-60 serine-rich protein-related (.1.2) AT5G20370 72 / 1e-15 serine-rich protein-related (.1) AT1G67910 41 / 6e-05 unknown protein AT1G24577 40 / 0.0001 unknown protein AT3G56500 39 / 0.0003 serine-rich protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258600 [exp] 275 / 1e-94 AT5G25280 181 / 1e-57 serine-rich protein-related (.1.2) Potri.006G060800 [exp] 160 / 1e-49 AT5G25280 130 / 2e-37 serine-rich protein-related (.1.2) Potri.018G120400 [exp] 159 / 3e-49 AT5G11090 126 / 3e-36 serine-rich protein-related (.1) Potri.006G060700 [exp] 61 / 5e-12 AT5G11090 66 / 4e-14 serine-rich protein-related (.1) Potri.018G120300 [exp] 60 / 1e-11 AT5G11090 67 / 1e-14 serine-rich protein-related (.1) Potri.018G079200 [exp] 46 / 7e-07 AT1G67910 45 / 9e-08 unknown protein Potri.002G250700 [exp] 46 / 2e-06 AT3G56500 43 / 5e-06 serine-rich protein-related (.1) Potri.008G186200 [exp] 40 / 0.0001 AT1G67910 85 / 4e-23 unknown protein Potri.010G046700 [exp] 39 / 0.0002 AT1G67910 82 / 4e-22 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001946 [exp] 206 / 1e-67 AT5G11090 179 / 9e-57 serine-rich protein-related (.1) Lus10001928 [exp] 199 / 8e-65 AT5G11090 177 / 3e-56 serine-rich protein-related (.1) Lus10039998 [exp] 178 / 3e-56 AT5G25280 157 / 3e-48 serine-rich protein-related (.1.2) Lus10008808 [exp] 177 / 4e-56 AT5G25280 153 / 2e-46 serine-rich protein-related (.1.2) Lus10006660 [exp] 167 / 8e-52 AT5G25280 144 / 4e-43 serine-rich protein-related (.1.2) Lus10038100 [exp] 165 / 4e-51 AT5G25280 145 / 4e-43 serine-rich protein-related (.1.2) Lus10008811 [exp] 55 / 4e-10 AT5G11090 61 / 2e-12 serine-rich protein-related (.1) Lus10038101 [exp] 49 / 2e-07 AT5G11090 54 / 2e-09 serine-rich protein-related (.1) Lus10034901 [exp] 40 / 9e-05 AT1G67910 49 / 6e-09 unknown protein Lus10023632 [exp] 40 / 0.0001 AT1G67910 48 / 1e-08 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G023300.1 pacid=42802137 polypeptide=Potri.018G023300.1.p locus=Potri.018G023300 ID=Potri.018G023300.1.v4.1 annot-version=v4.1 ATGGCGGCCCCTTCTTCACAGTCGAGAAGATCAAGCGGTCCTGTCTTACGATCTCTATCACCCCGTGGAGGATTACAAACACGCTATAATAACAGCTTGT CTTCTTCATCAGCTTCTGCTTTTGCTTCCTCCACAAGTTCGAGTTTTTATTCTCCACCATCCACATTTTTTCAGAATTCTCATCAACGATCAGCGTCCCC GACTCGTGTCAATCTTTACTCAACATCTACTCTCTCGCCTTCTTTTCGTTTCTCTATTGACCGATCCATCTCTCCTAATCGCTCAATATCCGTTTCGAAA AAGAATCATAGCCATCCGATCTCGGCTCCGAAGAGAACCTGCATGTGCTCGCCTACAACTCATCGAGGCTCGTTTCGGTGTAGTCTGCATAAAAACACTC CGAGCTCGGCCAATCCGGCGCCGTTTACTCCAAACCGGTTGAATATGCGGCGGTCTGCGATGACGAATTCGCTGGTTAGAATCGGTGGCGTTGAAGGCGA GTGGGTGAAGAGAGCGTTGACGGCTTTGATCAGGCCTTCATCGCATCAGCAACGGAGGAGAGGCGCCTTCCAGCCGCGGCCTAGTCGGTTATCGATCATA TCAAACGCCGATGATGAGATTTGTTGA
AA sequence Show only first row Show all	>Potri.018G023300.1 pacid=42802137 polypeptide=Potri.018G023300.1.p locus=Potri.018G023300 ID=Potri.018G023300.1.v4.1 annot-version=v4.1 MAAPSSQSRRSSGPVLRSLSPRGGLQTRYNNSLSSSSASAFASSTSSSFYSPPSTFFQNSHQRSASPTRVNLYSTSTLSPSFRFSIDRSISPNRSISVSK KNHSHPISAPKRTCMCSPTTHRGSFRCSLHKNTPSSANPAPFTPNRLNMRRSAMTNSLVRIGGVEGEWVKRALTALIRPSSHQQRRRGAFQPRPSRLSII SNADDEIC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11090			serine-rich protein-related (....		Potri.018G023300 [exp]	0	1
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Potri.008G126700 [exp]	10.00	0.9331
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G057000 [exp]	19.89	0.9297
AT1G02780		EMB2386	embryo defective 2386, Ribosom...		Potri.015G037100 [exp]	23.97	0.8841
AT1G77780			Glycosyl hydrolase superfamily...		Potri.005G172000 [exp]	24.97	0.9234
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042700 [exp]	25.78	0.9275	Pt-HSP70.10
AT5G40690			unknown protein		Potri.001G336200 [exp]	25.98	0.9080
AT3G12580		ATHSP70, HSP70	ARABIDOPSIS HEAT SHOCK PROTEIN...		Potri.001G042600 [exp]	30.04	0.9229	HSP70.9
AT1G74310		HOT1, ATHSP101	heat shock protein 101 (.1)		Potri.015G056900 [exp]	32.61	0.9227	Pt-ATHSP101.1
AT2G29500			HSP20-like chaperones superfam...		Potri.009G147900 [exp]	33.80	0.9224
AT5G05410	AP2_ERF	DREB2A	DEHYDRATION-RESPONSIVE ELEMENT...		Potri.010G183700 [exp]	36.74	0.9133	Pt-DREB2.2

Compare expression of checked genes

Potri.018G023300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.