Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32060 607 / 0 calcium-binding EF hand family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G118116 [exp] 310 / 2e-103 AT4G32060 278 / 2e-91 calcium-binding EF hand family protein (.1.2) Potri.018G118008 [exp] 218 / 4e-68 AT4G32060 217 / 3e-68 calcium-binding EF hand family protein (.1.2) Potri.018G118089 [exp] 148 / 9e-42 AT4G32060 140 / 2e-39 calcium-binding EF hand family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005346 [exp] 579 / 0 AT4G32060 536 / 0.0 calcium-binding EF hand family protein (.1.2) Lus10008807 [exp] 510 / 3e-178 AT4G32060 478 / 8e-166 calcium-binding EF hand family protein (.1.2) Lus10040000 [exp] 507 / 3e-177 AT4G32060 481 / 9e-167 calcium-binding EF hand family protein (.1.2) Lus10041027 [exp] 189 / 4e-57 AT4G32060 167 / 4e-49 calcium-binding EF hand family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [poplar] [flax] EF_hand PF00036 [poplar] [flax] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Potri.018G023400.1 pacid=42801262 polypeptide=Potri.018G023400.1.p locus=Potri.018G023400 ID=Potri.018G023400.1.v4.1 annot-version=v4.1 ATGCCTACTGCCTTAACATCTCTCAAAAGATCACGACCGTCCATCAAACAACTCTACCTAATCCAACGGCTCCATTCCCGCCACCTCTCCACCCCATCGC AACCCAACACTCCTCTCCCTCTGATAACTACCTCCACGTCCAACACTGACAATCACACAAGCAAGACTCTTTCTAGATTGTTCTCTGGTCTCGCTGCAGG CTCCACTTTTGTCTTACTGTACTGGTCACTCAACGATTCCAAACCGACGCAGTTTTTCTCCTTCGCTGACTGGTCAACGGAGTCGAAGGTCAATGATCGG CGCTTGATTTCTTTCCTTCCCAAACTATCCTTACCTGATTATAGCTCTAATTACATTTTCGGAGACGCGTTTAGGAGAAAAATTTTCTTTAATTACGAGA AGAGAATAAGATTAAGGAGTCCTCCCGAAAAGGTTTTCGAGTACTTTGCGTCTTTAAGAACTCCAGATGGCGAGGTGCTTATGACACCGGAAGATTTGAT GCGGGCGGTTGTTCCTGTTTTCCCTCCATCTGAATCCCATCTTGTTAGAGATGGATACTTGAAAGGGGAAAGGAATCCCGGCGAGTTAAGATGCACGTCT TCGGAATTTTTCATGCTATTTGATGTGAATAATGATGGCCTCATATCTTTCAAAGAGTATATCTTTTTCGCTACGCTTCTCAGTATCCCGGAATCAAGTT TTTCTGTGGCTTTCAGAATGTTTGACTTTAATAATAATGGGGAAATAGATAAGGAGGAGTTTAAGAAAGTGATGGCATTGATGCGAGCTCAGAACAGACA AGGGGCTGTCCACAGAGATGGGCTTCGACCAGGGTTGAAAGTTCATGGTTCCGTGGAAAATGGAGGTTTGGTGGAGCACTTCTTTGGAAAAGATGGAAAG GCAAGCCTCCGACATGATAAATTTATTCAGTTCATGAGAGATTTGAACAATGAGATATTGAGATTGGAATTTGCACACTATGATTACAAATTAAGAGGAA CCATATCCGCCAAAGATTTTGCCTTGTCCATGGTTGCTTCTGCTGACATGAGTCATTTAGGCAAGTTGCTTGATCGGGTTGATGAATTAAATGATCAGGC CAACCTTGGTGGCTTACGCATAACATTAGAGGAGTTTAAAAGTTTTGCAGAGTTGCGTAAAAAGTTGCTGCCATTTTCTTTGGCCCTTTTTAGTTACGGC AAAGTAAATGGCCTGTTAATGAGGGAGGACTTCCAGCGGGCTGCATCACATGTTTGTGGAGTTTCACTCAGCGACAATGTGGTTGAAATCATTTTCCACT TGTTTGATTCAAATCATGATGGAAGTCTAAGTGCAGATGAGTTCGTGAGAGTTTTACACAGAAGGGAAAGGGACATTGCACAGCCAGTGGAATCAGGACT CGCGGGGTTTTTGTCTTGCTGCTTTAACCGTGCAGCTAACAGCCCCATTGGACGGTTCATTTCCTAA
AA sequence Show only first row Show all	>Potri.018G023400.1 pacid=42801262 polypeptide=Potri.018G023400.1.p locus=Potri.018G023400 ID=Potri.018G023400.1.v4.1 annot-version=v4.1 MPTALTSLKRSRPSIKQLYLIQRLHSRHLSTPSQPNTPLPLITTSTSNTDNHTSKTLSRLFSGLAAGSTFVLLYWSLNDSKPTQFFSFADWSTESKVNDR RLISFLPKLSLPDYSSNYIFGDAFRRKIFFNYEKRIRLRSPPEKVFEYFASLRTPDGEVLMTPEDLMRAVVPVFPPSESHLVRDGYLKGERNPGELRCTS SEFFMLFDVNNDGLISFKEYIFFATLLSIPESSFSVAFRMFDFNNNGEIDKEEFKKVMALMRAQNRQGAVHRDGLRPGLKVHGSVENGGLVEHFFGKDGK ASLRHDKFIQFMRDLNNEILRLEFAHYDYKLRGTISAKDFALSMVASADMSHLGKLLDRVDELNDQANLGGLRITLEEFKSFAELRKKLLPFSLALFSYG KVNGLLMREDFQRAASHVCGVSLSDNVVEIIFHLFDSNHDGSLSADEFVRVLHRRERDIAQPVESGLAGFLSCCFNRAANSPIGRFIS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32060			calcium-binding EF hand family...		Potri.018G023400 [exp]	0	1
AT5G36930			Disease resistance protein (TI...		Potri.011G013450 [exp]	8.94	0.7626
AT5G36930			Disease resistance protein (TI...		Potri.006G269900 [exp]	29.84	0.6897
AT1G28090			Polynucleotide adenylyltransfe...		Potri.003G164400 [exp]	99.13	0.6435
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.006G061000 [exp]	111.00	0.6443
AT5G36930			Disease resistance protein (TI...		Potri.011G014101 [exp]	128.21	0.6443
AT3G49600		SUP32, ATUBP26,...	ubiquitin-specific protease 26...		Potri.005G179500 [exp]	135.55	0.6191	UBP26.2
AT5G11470			bromo-adjacent homology (BAH) ...		Potri.006G244000 [exp]	149.35	0.6130
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G009400 [exp]	167.81	0.6058
AT3G21430	MYB	ATALY3	ARABIDOPSIS THALIANA ALWAYS EA...		Potri.008G216600 [exp]	169.11	0.6040
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Potri.011G120000 [exp]	210.06	0.6045	NTR1.4

Compare expression of checked genes

Potri.018G023400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.