Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25290 852 / 0 Phox1 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein AT4G32070 626 / 0 Phox4 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT5G20360 518 / 1e-173 Phox3 Phox3, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT1G62390 350 / 8e-110 CLMP1, Phox2 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) AT4G30480 66 / 1e-11 TPR1, AtTPR1 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) AT3G58620 61 / 2e-09 TTL4 tetratricopetide-repeat thioredoxin-like 4 (.1) AT1G33400 57 / 4e-08 TPR9 tetratricopeptide repeat 9, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G54010 56 / 5e-08 DEI1, PAS1 PASTICCINO 1, FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1.2) AT3G25230 56 / 7e-08 ROF1, ATFKBP62 FK506 BINDING PROTEIN 62, rotamase FKBP 1 (.1.2) AT2G42580 55 / 1e-07 VIT, TTL3 VHI-INTERACTING TPR CONTAINING PROTEIN, tetratricopetide-repeat thioredoxin-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258300 [exp] 1188 / 0 AT2G25290 680 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.018G121100 [exp] 802 / 0 AT2G25290 737 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Potri.004G002900 [exp] 381 / 2e-121 AT1G62390 926 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.011G021000 [exp] 380 / 7e-121 AT1G62390 885 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Potri.006G178900 [exp] 77 / 2e-15 AT4G30480 275 / 1e-92 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.018G100700 [exp] 74 / 3e-14 AT4G30480 303 / 8e-104 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Potri.007G091200 [exp] 60 / 4e-09 AT5G65160 570 / 0.0 tetratricopeptide repeat 14, tetratricopeptide repeat (TPR)-containing protein (.1) Potri.014G149400 [exp] 58 / 2e-08 AT5G48570 741 / 0.0 FKBP-type peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.004G144300 [exp] 57 / 2e-08 AT2G15790 590 / 0.0 SQUINT, CYCLOPHILIN 40, peptidyl-prolyl cis-trans isomerase / cyclophilin-40 (CYP40) / rotamase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006196 [exp] 947 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001927 [exp] 942 / 0 AT2G25290 879 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001947 [exp] 940 / 0 AT2G25290 884 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10001948 [exp] 923 / 0 AT4G32070 864 / 0.0 Phox4, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10038106 [exp] 512 / 4e-173 AT2G25290 655 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10008035 [exp] 509 / 8e-172 AT2G25290 667 / 0.0 Phox1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein Lus10039592 [exp] 377 / 1e-119 AT1G62390 888 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10029481 [exp] 372 / 1e-117 AT1G62390 889 / 0.0 Phox2, CLUMPED CHLOROPLASTS 1, Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein (.1) Lus10035117 [exp] 67 / 8e-12 AT4G30480 291 / 3e-99 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3) Lus10031983 [exp] 69 / 1e-11 AT4G30480 222 / 9e-76 tetratricopeptide repeat 1, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0072 [poplar] [flax] Ubiquitin PF00564 [poplar] [flax] PB1 PB1 domain CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.018G023500.1 pacid=42801714 polypeptide=Potri.018G023500.1.p locus=Potri.018G023500 ID=Potri.018G023500.1.v4.1 annot-version=v4.1 ATGGGAAAGCCAACTGGTAAAAAGAAGAATCCGGGAACGGAAACGCCTCCGGCATCACCGAGAACGACCATTGACATGAGGCAAACCAAATCCTCAAAGG CCTTTGATGAAGACACAGCAGTTTTCATCAACATGTCGCAAGAACTCAAAGAAGAAGGCAACAGGCTCTTTCAAAGGAGAGACCATGAAGGTGCCATGTT GAAGTATGAAAAAGCCCTCAAGTTACTGCCAAGAAACCATATTGATGTGGCTTATCTACGCACCAACATGGCTGCTTGCTATATGCAAATGGGTCTTGGT GAGTATCCTCGAGCAATCAGTGAATGTAATTTAGCTTTAGAGGCTGTGCCAAAATATAGTAAAGCTTTGTTGAAAAGAGCTAGGTGCTATGAGGCCTTGA ATAGATTGGATTTGGCTTTCAGGGATGTTAGTAATGTTTTGAGTATGGAACCTAATAATATGATGGGTTTGGAGATTTTGGAGAGTGTTAAGAAGGCAAT GAGTGAAAAGGGTATTACTTTTGATGAGAAATTAATTGTGATGGATAGTGTGGTGGAAACTGGGGTGGCACGTTTGCGTAAAGTTGTGAAAGCAAAGGTA AAGAAGAAGAAGAAGATTAGTGGTAAAGGAGAGGAGAACAATATTGCTGGTGTAGTAGAAGAGAAGAAGGTGGAGAATAAGGACAAGGTGGTTGTGCGGG AGAAGGTGAGTCCTGTTGCTAAGGATAAAGAGGTACATATGAGGACTATTGAGGAAGAAAAGGTGGTTACCGAAGATGTTAATGTGGAGAAAGTGATATC CAAGACCGTGAAACTGGTTTTTGGCGAGGATATTAGATGGGCACAATTACCTGTGAATTGTAGTATTGGATTGCTGAGAGACATAGTTCGGGATAGGTTT CCTCGCTTGAAGGGTGTCTTAATGAAGTACAGGGACCCTGAGGGTGATTTGATTACAATTACCACTAACAATGAATTAAGGTTAGCTGAATCATCAAGTG ATTTGCAAGGGTCTCTCAGGTTCTATGTTGTTGAAGTCAGTTTTGATCAAGAACCAGCTTATGAGGGGATGAAGAAGGAAGAGGAGGTGCATGAGGATGT TAAGAAAACGAGTGAAGGTGTAGAAGTTGAAAAAGGTCCAGGTGGTATTGATGATTGGATTGTTCAATTTGCACGATTGTTCAAGAACCATGTTGGGTTT GATTCTGATTCATGCCTGGATCTTCATGAACTAGGGATGAAGTTATACTCAGAGGCAATGGAGGATACTGTTACTAGTGAAGAAGCCCAGGAACTTTTCG ATGTTGCTGCTGATAAGTTCCAAGAGATGGTAGCTTTGGCTTTGTTCAATTGGGGAAATGTTCACGCGTCAAGGGCGAGGAAACAAATCTTCTTTTCAGA AGATGGTTCAAGGGAGTCTGTACTTGCACAGGTCAAGAGAGCATATGACTGGGCCAAGAAAGAATATACGAGGGCTGGAATGAAATATCAAGAAGCTTTG AAAATCAAACCGGATTTCTATGAAGGCCTTCTTGCTCTTGGGCAACAGCAGTTTGAGCAAGCAAAACTTTGCTGGTACTTTGCGATCGGGAGCAAGATTG ATTTGGAAAGTGGACCTTCCGAGGAGGTCCTGGATCTGTATAACAAGGCTGAGGACAGCATGGAAAGGGGTATGCAAATGTGGGAAGAGATGGAAGAGCA GCGTTTAAATGGACTATCCAAATTTGACAAATATAAAGACCAGTTGCAAAAATTGGGTTTGGATGGCCTATTGAGAGATCCATCCCCTGAAGAAGCTGCA GAGCAAGCAGCAAACATGAGTTCACAGATATACCTCTTGTGGGGTACCATGCTGTATGAGCGTTCTGTTGTGGAATATAAGCTAGAGCTACCAACTTGGG AAGAATGTTTAGAGGTTTCAGTAGAGAAGTTTGAACTTGCTGGAGCTTCTCCAACAGATATAGCTGTTATGATAAAGAACCATTGTTCAAACTCAACAGC ACTTGAAGGTTTGGGGTTCAAAATTGATGAGATTGTACAGGCATGGAATGAAATGTATGATGCAAAGAGGTGGGAGATTGGTGTTCCTTCTTTCAGGCTA GAGCCATTGTTTCGTCGAAGGGTTCCTAAACTTCATGATATGTTGGAGCATGTTTGA
AA sequence Show only first row Show all	>Potri.018G023500.1 pacid=42801714 polypeptide=Potri.018G023500.1.p locus=Potri.018G023500 ID=Potri.018G023500.1.v4.1 annot-version=v4.1 MGKPTGKKKNPGTETPPASPRTTIDMRQTKSSKAFDEDTAVFINMSQELKEEGNRLFQRRDHEGAMLKYEKALKLLPRNHIDVAYLRTNMAACYMQMGLG EYPRAISECNLALEAVPKYSKALLKRARCYEALNRLDLAFRDVSNVLSMEPNNMMGLEILESVKKAMSEKGITFDEKLIVMDSVVETGVARLRKVVKAKV KKKKKISGKGEENNIAGVVEEKKVENKDKVVVREKVSPVAKDKEVHMRTIEEEKVVTEDVNVEKVISKTVKLVFGEDIRWAQLPVNCSIGLLRDIVRDRF PRLKGVLMKYRDPEGDLITITTNNELRLAESSSDLQGSLRFYVVEVSFDQEPAYEGMKKEEEVHEDVKKTSEGVEVEKGPGGIDDWIVQFARLFKNHVGF DSDSCLDLHELGMKLYSEAMEDTVTSEEAQELFDVAADKFQEMVALALFNWGNVHASRARKQIFFSEDGSRESVLAQVKRAYDWAKKEYTRAGMKYQEAL KIKPDFYEGLLALGQQQFEQAKLCWYFAIGSKIDLESGPSEEVLDLYNKAEDSMERGMQMWEEMEEQRLNGLSKFDKYKDQLQKLGLDGLLRDPSPEEAA EQAANMSSQIYLLWGTMLYERSVVEYKLELPTWEECLEVSVEKFELAGASPTDIAVMIKNHCSNSTALEGLGFKIDEIVQAWNEMYDAKRWEIGVPSFRL EPLFRRRVPKLHDMLEHV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25290		Phox1	Phox1, Octicosapeptide/Phox/Be...		Potri.018G023500 [exp]	0	1
AT1G06530		PMD2	peroxisomal and mitochondrial ...		Potri.002G060200 [exp]	5.19	0.8519
AT5G55860			Plant protein of unknown funct...		Potri.016G005200 [exp]	14.38	0.8423
AT1G76810			eukaryotic translation initiat...		Potri.019G103600 [exp]	15.68	0.8516
AT5G56360		PSL4	PRIORITY IN SWEET LIFE 4, calm...		Potri.003G223000 [exp]	17.86	0.8368
AT1G15530			Concanavalin A-like lectin pro...		Potri.015G083300 [exp]	18.43	0.8051
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Potri.015G130701 [exp]	19.62	0.8454
AT3G58050			unknown protein		Potri.016G060200 [exp]	19.69	0.7817
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	20.27	0.8505
AT5G43490			unknown protein		Potri.017G058600 [exp]	27.60	0.8476
AT1G05150			Calcium-binding tetratricopept...		Potri.005G234900 [exp]	33.46	0.7617

Compare expression of checked genes

Potri.018G023500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.