Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G20142 87 / 5e-19 Toll-Interleukin-Resistance (TIR) domain family protein (.1) AT4G05030 46 / 2e-06 Copper transport protein family (.1) AT3G20180 43 / 4e-05 Copper transport protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G267201 [exp] 157 / 6e-44 AT2G20142 61 / 5e-10 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.001G007501 [exp] 147 / 2e-40 AT2G20142 77 / 2e-15 Toll-Interleukin-Resistance (TIR) domain family protein (.1) Potri.T044600 [exp] 140 / 2e-36 AT4G27220 192 / 7e-51 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145558 [exp] 138 / 1e-35 AT4G27220 188 / 1e-49 NB-ARC domain-containing disease resistance protein (.1) Potri.018G145554 [exp] 76 / 3e-16 AT4G15020 55 / 4e-09 hAT transposon superfamily (.1.2) Potri.006G258250 [exp] 69 / 1e-14 ND / Potri.009G048100 [exp] 64 / 2e-12 AT3G07600 79 / 8e-20 Heavy metal transport/detoxification superfamily protein (.1) Potri.009G048400 [exp] 63 / 4e-12 AT3G07600 80 / 3e-20 Heavy metal transport/detoxification superfamily protein (.1) Potri.015G125950 [exp] 67 / 6e-12 AT3G58480 91 / 3e-19 calmodulin-binding family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025181 [exp] 73 / 8e-16 AT5G48290 81 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016062 [exp] 72 / 2e-15 AT5G48290 89 / 2e-23 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10008904 [exp] 76 / 3e-15 ND 38 / 0.007 Lus10025180 [exp] 71 / 7e-15 AT5G48290 81 / 2e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016060 [exp] 69 / 4e-14 AT3G07600 64 / 9e-14 Heavy metal transport/detoxification superfamily protein (.1) Lus10016061 [exp] 69 / 4e-14 AT5G48290 82 / 1e-20 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10025182 [exp] 54 / 1e-08 AT5G48290 62 / 5e-13 Heavy metal transport/detoxification superfamily protein (.1.2) Lus10016063 [exp] 53 / 1e-08 AT3G07600 64 / 8e-14 Heavy metal transport/detoxification superfamily protein (.1) Lus10016059 [exp] 53 / 1e-08 AT4G05030 62 / 2e-13 Copper transport protein family (.1) Lus10014967 [exp] 49 / 9e-07 AT1G01490 100 / 9e-27 Heavy metal transport/detoxification superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G023600.1 pacid=42801121 polypeptide=Potri.018G023600.1.p locus=Potri.018G023600 ID=Potri.018G023600.1.v4.1 annot-version=v4.1 ATGGAGGAATCAAAGCAAGTCAACGTTGAGATATCAAGGGCAACAACAGCAGAAGAAGCACAAGGAAAAGGGTTAGTGGATGGGATAATGGAGGTTCAAG ATGTCACAGAATCCTCAGGACCCCTTCAACCGAAGAGTCTTAATGGACTAGCCTCTGCCTCCAATTCTGCCTTTCGCCAGCGATTTGGGTTTAAGGAGAA GTCGAAGCTGGAACAGGTGGTAATCGAGGTAAACTTCGATAGTTCGAAGGCTGGTTACCTTGCCTTGAAACTTGTAGCTGAAATTGCAGGTGTGGAAAGT GTGGAGTTAGGAGGGCCAGATAGGAACCTATTGGAAGTGATAGGAGATGGAGTCGATGCCCATCATCTTGTAACCTTGCTACAAAAGAAGTTTGGAAATG CAAAGCTAATAAGCATGGGTCCTGTGAAGGAGCCGAAGAAAGATACCATGGAAGATGAGCCAGTCCTGATCAAAGAAGAGGAAAATGAGCCAATGTTGCA ACGCCCTGTTTCATCATCCATTCCTCATTGTCTTGATCCTATCAGTGAGTCTGTAGTGGATATTGTTGAGACGGAGAAGCTGAATGGAGCAATGGAGATG GAGATGGAGATGGAAACAAAGACAAAAACTCATAGTAATCTCGGTCTGGAAGAGAGTTCATGTATAAGTAAAACAACCCAGTGGACTCTACTAATCACCA GCTTACTTCTAGAGGCTATATCCGCAATTTTTGATCAGCTGGGTTATGCATTAATTAGTATGGCGATGGCATTTGTAGCTTTGCTTCTTTCCATTCTTGA TCTCATTTACAAGGCTCGAGAGAATGGCATTACATGTGATGGGAGGAGCCTGCTACCCTGTTTTTATCGCCATTCAAGTCATGATTTCCAGAATCGCAAG CCTTTTGGTAGTGTTGTTGAGTACTTTGGATTTGCTGGTGCTGTCTGGCAATGCTCTTACACAACAGTAGGGTATCATTATGCTCGTCGGAACTTGGATA ATCCAATCAAAATTTGTCTTCTACCTTTCATTTTTGCTTTGTGTGTGCTAATTTCTAAGTTAGTTAAGAGTGGCCAACATGAACCATTGGTTGAACTTAA ACCCACATGA
AA sequence Show only first row Show all	>Potri.018G023600.1 pacid=42801121 polypeptide=Potri.018G023600.1.p locus=Potri.018G023600 ID=Potri.018G023600.1.v4.1 annot-version=v4.1 MEESKQVNVEISRATTAEEAQGKGLVDGIMEVQDVTESSGPLQPKSLNGLASASNSAFRQRFGFKEKSKLEQVVIEVNFDSSKAGYLALKLVAEIAGVES VELGGPDRNLLEVIGDGVDAHHLVTLLQKKFGNAKLISMGPVKEPKKDTMEDEPVLIKEEENEPMLQRPVSSSIPHCLDPISESVVDIVETEKLNGAMEM EMEMETKTKTHSNLGLEESSCISKTTQWTLLITSLLLEAISAIFDQLGYALISMAMAFVALLLSILDLIYKARENGITCDGRSLLPCFYRHSSHDFQNRK PFGSVVEYFGFAGAVWQCSYTTVGYHYARRNLDNPIKICLLPFIFALCVLISKLVKSGQHEPLVELKPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G20142			Toll-Interleukin-Resistance (T...		Potri.018G023600 [exp]	0	1
AT2G38730			Cyclophilin-like peptidyl-prol...		Potri.003G194500 [exp]	4.89	0.8275
AT5G35732			unknown protein		Potri.014G162400 [exp]	6.78	0.7642
AT5G22540			Plant protein of unknown funct...		Potri.004G187100 [exp]	9.64	0.8110
AT2G19080			metaxin-related (.1)		Potri.018G147625 [exp]	10.19	0.7973
AT3G11340		UGT76B1	UDP-dependent glycosyltransfer...		Potri.010G195300 [exp]	12.48	0.7770
AT1G29810			Transcriptional coactivator/pt...		Potri.011G078900 [exp]	14.83	0.7817
AT5G09630			LisH/CRA/RING-U-box domains-co...		Potri.001G286300 [exp]	15.49	0.7714
AT1G61065			Protein of unknown function (D...		Potri.004G038700 [exp]	15.87	0.7539
AT1G21780			BTB/POZ domain-containing prot...		Potri.005G178400 [exp]	17.14	0.7277
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Potri.018G050200 [exp]	19.74	0.7747

Compare expression of checked genes

Potri.018G023600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.