Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80490 1195 / 0 TPR1 TOPLESS-related 1 (.1.2) AT3G15880 1118 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT5G27030 1016 / 0 TPR3 TOPLESS-related 3 (.1.2) AT1G15750 955 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G16830 796 / 0 TPR2 TOPLESS-related 2 (.1) AT2G25420 245 / 1e-68 transducin family protein / WD-40 repeat family protein (.1) AT3G49660 59 / 6e-09 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G02730 57 / 4e-08 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT1G11160 57 / 1e-07 Transducin/WD40 repeat-like superfamily protein (.1) AT5G08560 56 / 2e-07 transducin family protein / WD-40 repeat family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258100 [exp] 1738 / 0 AT1G80490 1211 / 0.0 TOPLESS-related 1 (.1.2) Potri.018G128000 [exp] 1134 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.006G066800 [exp] 1099 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.013G081300 [exp] 1041 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 1035 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1025 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.003G030000 [exp] 988 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 984 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.018G023900 [exp] 919 / 0 AT1G80490 1420 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023119 [exp] 1230 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10001951 [exp] 1038 / 0 AT1G15750 1007 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10006650 [exp] 1032 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10029876 [exp] 1005 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 1002 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10011481 [exp] 979 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 957 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10043258 [exp] 892 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10001924 [exp] 807 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10019401 [exp] 772 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0561 [poplar] [flax] LisH PF08513 [poplar] [flax] LisH LisH
Representative CDS sequence Show only first row Show all	>Potri.018G023800.1 pacid=42801526 polypeptide=Potri.018G023800.1.p locus=Potri.018G023800 ID=Potri.018G023800.1.v4.1 annot-version=v4.1 ATGGCTGCTCTCTGTAAAGATCTTGTCCTGTTAATCTCACAGTTCTTAGACGAGGAAGGGTTCAAAGAAACTGCTCGCATGCTTGAGCGTGAAAGTGGTT ATTACTTCAGCATGAAGTTTTTTGAGGACATGATACGCAGTGGCAACTGGGATGAGGCTGAGAGATATCTTTCTTGTTTCACAAAATTAGATGACAACAG ATACTCGACAAAGATCTATTTTGAAATTAGGAAGCAGAAATTCCTTGAGGTGTTGGACAACAATGAACGTTCCAAGGCTTTAGACATCCTTATGAAGGAT TTGAAAGCTTTTGCCCCAGACAACGAGGAGCTATTAAAGGAAATGACTTTGCTTTTGACATTAAATAATATAAGGGACCATGAGTCACTCTCTATGTATA GTGATGCAGAGTCGGCAAGAAAAGTTATGATGGTTGAGCTTAAGAAAGTTATTGAAGCAAATCCCCTTTTGCGTGAGAAATTGGAATTTCCGAACATTGC AAATCATAGGCTACGGCGTCTCATAAACCAAAGTCTGAATTGGCAGCATATGCATTGTGCATATCCGCAGCCAAATCCTGATATAAGAACCCTTTTTGTG GATCACATTTGTGTACCAATACCATCGGATGATCATTTATTTTCAGCAGCAAGTGATAGCAATCCACTGCCTTCTCAAACAACATCAATGCTAGTTTCAA CTTCCTCAGCCTCAAATTCTACTTCATCTTCTGAGGCCCACTCTTCAATTTCAAGTGAAGCTTTGTCTCTTGGAGTTCCAACAAACATAGCTATGATAGA GGTTTTGGAGGATAATACTACTGTAAATGACAGTGGTATTCCTAAAAACAGAATTGTAAACCTAAAAAGGCCTTCCAATGAGGAAATATCAGATGCCTCT CTTCCTGATCAAAGCTCTGTTAACATTTCTGATGATTTGCCAAAGAATGTTTTTAGGATATTAAATGAGGGGTCATCTCCAACAAGCATGGATTTTCATC CTGAAAAACAGACTGTTCTTCTAGTTGGAACCACTGTGGGGGACATTGGATTGTGGGAAGTTAGTTCAGGGGAAAGTTTGCTTTCAAGGAATTTTAAGGT TTGGGATATTGCAGCATGTTCGATGATGTTCAAGGCAACTTTGCTTAAGGATCCTAGTGTTTCTGTTAATCGTGTTGCTTGGAGCCCAGAAGGCGGTTTG TTTGGGGTTGCTTATTCAAAACACTTGGTGCAAATATATTCTTATAATGAAGCCAAAGATGCGCGGCAGCAATTGGAGATTGATGCTCATGTTGGTGGTG TAAATGACCTAACCTTCTCTGCCCCTGAGAAACAACTTTTGGTCATTACCTGTGGTGATGACAAGATCGTTAAGGCATGGGATGCGACTGACGGTGTCAA AATGTATACTTTTGAGGGCCATGATGCTCCTGTTTATTCTCTCTGTCCCTATAGCAAGGGAAACGTTCATTTTGTCTTTGCGACATCAGTGAATGGGAAC ATAAAAGTTTGGCTGTATGATAATTTAGGAGCCCGAGTAGATTATGATGCTCCTGGCCTGGGGTGTACATCAATGGCTTATAGTGGTGATAGAAGGCTTT TCTCATGCGGGACCAGCGGAAGTGGAGAGTCATTTCTTGTTGAATGGGATGACTCTGAAGGTGCCATAAAAAGAACCTATCTAGGATTGCAAAAGAATTC TTCAAGTGTAGTGCAGTTCGATATAATGAAGAACCAGGTTTTAGCTGCTGGTGACGAGCATGTGATCAAAATTTGGGATATGAACAAAATTGAGCTTTTC ACAACCATTGATGCAGAGGGAGGCTTACCAGCAAACCCATGTGTTCGATTTAACAAGGAAGGCACGCTGTTGGCTGTTTCTGCAAATGACAACAAGATCA AAATCTTGGCAAAAGATGGCAGTCTTCAGTCACTGCATACAACAGAAAATTGCTTGGATGATGATTTTAGAGTTTTCTCTGATACTCTTAAGAAGCTTGT AAGTGAAGCAATTTCAAAAGGTGCCTGTGCTCAAGATGCAGATGAAGCTGTTGCAAAAAATGGAAACCTGAAGGCAGTGAAATCTAAAATTACTGGAAAA GACACTAAGTCAAAGAGTGGGAGGCTCATTGAATTAAACAGCCCTTCTCAGTGCCAGATTCTGCGACTTCCTTCTCATATGAAAGCAAACAAGATATCAA GGCTCATTTACAACAATGCAGGTAACTCCATTTTGGCATTAACATCAAATGCCACTCATTTATATTGGAAATGGCCACAGAATGACTTTGACTTGAGTGA CACGGCAGCTGCAAAAGTTTCCCCTCAACTATGGCAACCCAGGAGCTACTCAGGGCTGATGACAAATGACCTTACAGGCAGCAACCCTGAAGAGACAGTT CCCTGCTTTGCCCTGTCCAGGAATGATTCATATCTTATGTCATCATCCGGAGGGAGAATCTCTCTGTATAATTTGCTGAAATTCAAGACGATGCTGTCCA TCATGCAACCACCACCTGCAGCAACTTGCATTGCTTTCCACCCTCAAGATAACAACATACTCGCTATAGGGAGAGACAATTCCACAATTCTAATATATAA TGTCCGTTCAGCTAAGGTCATTACCATACTTGAGGGTCATTCTAAGAGAGTCTCTGGTCTAGCCTTCTCTAATGACCTGAATTTACTTGTTTCTTCTGGA GCAGATGCTCAGATTTTTGTCTGGAATGTTGAAGGGTGGTACAAACAGAGGAGCACATTCTTGCAGATTCCCGATGGAAGAATACCTTTTTCATTATCAA CAGATACCCACATCCAGTTTCATCAGAATCAGACAGAATTCCTTTCTGTACATGAGACTCACCTGGCAATTTATGAAGCCAGAAAATTAGAATGTGTGAA GCAGTGGATTCCAGGAGATTTTGCAACACCAATTTCCCATGCAACATTCTCATGCGATGGCCAGATGGTGTATGCCAGCTTTCTGGATGGACTTGTCTCT ATATTTGATGCCTCAGATTTTCAGTTATATTGTCAGATTAATCCAACTGCCTACCTTTTCCCCACTTCAAGTTTGGGAGTGTATCCGATTGCCATTGCCG CACATCCTCAGGAACCAAACCAATTTGCAGTGGGACTGACAGATGGTGGTGTTATAGTCTTTGAGCCTCCGATTTCTGCTGGTAAATGGAGTATGTTGAC AGCCGATGAAAATGGATCAGCAAGTAAATTACCTGCCGAATCCGAGGGTAATTATTGA
AA sequence Show only first row Show all	>Potri.018G023800.1 pacid=42801526 polypeptide=Potri.018G023800.1.p locus=Potri.018G023800 ID=Potri.018G023800.1.v4.1 annot-version=v4.1 MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCFTKLDDNRYSTKIYFEIRKQKFLEVLDNNERSKALDILMKD LKAFAPDNEELLKEMTLLLTLNNIRDHESLSMYSDAESARKVMMVELKKVIEANPLLREKLEFPNIANHRLRRLINQSLNWQHMHCAYPQPNPDIRTLFV DHICVPIPSDDHLFSAASDSNPLPSQTTSMLVSTSSASNSTSSSEAHSSISSEALSLGVPTNIAMIEVLEDNTTVNDSGIPKNRIVNLKRPSNEEISDAS LPDQSSVNISDDLPKNVFRILNEGSSPTSMDFHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNRVAWSPEGGL FGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITCGDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGN IKVWLYDNLGARVDYDAPGLGCTSMAYSGDRRLFSCGTSGSGESFLVEWDDSEGAIKRTYLGLQKNSSSVVQFDIMKNQVLAAGDEHVIKIWDMNKIELF TTIDAEGGLPANPCVRFNKEGTLLAVSANDNKIKILAKDGSLQSLHTTENCLDDDFRVFSDTLKKLVSEAISKGACAQDADEAVAKNGNLKAVKSKITGK DTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALTSNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETV PCFALSRNDSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNVRSAKVITILEGHSKRVSGLAFSNDLNLLVSSG ADAQIFVWNVEGWYKQRSTFLQIPDGRIPFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQMVYASFLDGLVS IFDASDFQLYCQINPTAYLFPTSSLGVYPIAIAAHPQEPNQFAVGLTDGGVIVFEPPISAGKWSMLTADENGSASKLPAESEGNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023800 [exp]	0	1
AT2G36470			Plant protein of unknown funct...		Potri.004G098000 [exp]	5.47	0.8631
AT3G50700	C2H2ZnF	ATIDD2	indeterminate(ID)-domain 2 (.1...		Potri.002G208444 [exp]	6.40	0.8944
AT5G46060			Protein of unknown function, D...		Potri.001G372900 [exp]	6.92	0.8483
AT2G33020		AtRLP24	receptor like protein 24 (.1)		Potri.011G141100 [exp]	8.71	0.8323
AT2G47260	WRKY	ATWRKY23, WRKY2...	WRKY DNA-binding protein 23 (....		Potri.014G118200 [exp]	8.83	0.8714
AT5G48130			Phototropic-responsive NPH3 fa...		Potri.014G164000 [exp]	10.00	0.8763
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	14.38	0.8569
AT2G24100		ASG1	ALTERED SEED GERMINATION 1, un...		Potri.005G014600 [exp]	17.02	0.8212
AT3G46920			Protein kinase superfamily pro...		Potri.006G190200 [exp]	17.08	0.8130
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G136501 [exp]	20.12	0.8268

Compare expression of checked genes

Potri.018G023800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.