Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G80490 1417 / 0 TPR1 TOPLESS-related 1 (.1.2) AT1G15750 1402 / 0 TPL, WSIP1 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) AT3G15880 1274 / 0 WSIP2, TPR4 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) AT3G16830 1168 / 0 TPR2 TOPLESS-related 2 (.1) AT5G27030 1143 / 0 TPR3 TOPLESS-related 3 (.1.2) AT2G25420 210 / 1e-56 transducin family protein / WD-40 repeat family protein (.1) AT1G11160 65 / 4e-10 Transducin/WD40 repeat-like superfamily protein (.1) AT1G15440 59 / 2e-08 ATPWP2 \(PERIODIC TRYPTOPHAN PROTEIN 2, periodic tryptophan protein 2 (.1.2) AT2G43770 58 / 2e-08 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 58 / 3e-08 Transducin/WD40 repeat-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257900 [exp] 1942 / 0 AT1G80490 1466 / 0.0 TOPLESS-related 1 (.1.2) Potri.003G030000 [exp] 1434 / 0 AT1G80490 1922 / 0.0 TOPLESS-related 1 (.1.2) Potri.001G200500 [exp] 1418 / 0 AT1G15750 1922 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.006G066800 [exp] 1314 / 0 AT3G15880 1689 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.018G128000 [exp] 1307 / 0 AT3G15880 1650 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Potri.013G081300 [exp] 1209 / 0 AT1G15750 1540 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Potri.005G021700 [exp] 1177 / 0 AT5G27030 1714 / 0.0 TOPLESS-related 3 (.1.2) Potri.013G012100 [exp] 1160 / 0 AT5G27030 1698 / 0.0 TOPLESS-related 3 (.1.2) Potri.018G023800 [exp] 862 / 0 AT1G80490 1195 / 0.0 TOPLESS-related 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011481 [exp] 1407 / 0 AT1G15750 2011 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10023119 [exp] 1384 / 0 AT1G15750 1959 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10043258 [exp] 1306 / 0 AT3G15880 1776 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3) Lus10006650 [exp] 1222 / 0 AT1G15750 1593 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10019401 [exp] 1195 / 0 AT1G15750 1596 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10038094 [exp] 1074 / 0 AT1G80490 1525 / 0.0 TOPLESS-related 1 (.1.2) Lus10001924 [exp] 919 / 0 AT1G15750 1006 / 0.0 WUS-INTERACTING PROTEIN 1, TOPLESS, Transducin family protein / WD-40 repeat family protein (.1.2.3.4) Lus10029876 [exp] 852 / 0 AT5G27030 1722 / 0.0 TOPLESS-related 3 (.1.2) Lus10020668 [exp] 850 / 0 AT5G27030 1717 / 0.0 TOPLESS-related 3 (.1.2) Lus10011905 [exp] 757 / 0 AT3G15880 920 / 0.0 TOPLESS-RELATED 4, WUS-interacting protein 2 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.018G023900.5 pacid=42800996 polypeptide=Potri.018G023900.5.p locus=Potri.018G023900 ID=Potri.018G023900.5.v4.1 annot-version=v4.1 ATGACGTCTTCGCTCAGCCGAGACCTTATCTTTTTAATTTTGCAGTTTCTTGATGAAGAAAAGTTCAAAGAAACTGCTCACAAGCTGGAGCAGGAATCAG GGTTGTTCTTTAATGCAAAGTACTTTGAGGAGCTTGTGTTGGGTGGCGACTGGGATGAGGTTGAGAAGTATCTTTCTGGGTTTACCAAAGTGGATGATAA CCGATATTCGATGAAGATATTTTTTGAAATTCGCAAGCAAAAGTATCTGGAAGCATTGGATAAGCTTGATCGGACCAAGGCTGTAGATATCCTCATGAAG GATCTCAAAGTTTTTGCCTCTTTTAATGAAGACTTGTTCAAAGAAATTACTCAGCTGCTTACATTGGATAATTTCAGGGAAAATGATCAACTCTCGAATT ATAGAGATACAAAGTCAGCAAGAGCAATTATGTTGCTTGAGCTGAAAAAGCTTATGGAGTCAAATCCCCTTTTCCGTGACAAATTGCAGTATCCTAACAT AAAAAATTCAAGATTACGAATGCTTATCAACCAAAGCTTGAATTGGCAGCATTCCCTTTGTGGTAATCCAGGGCAAAATCCTGATATAAGAACCCTCTTT GTTGATCACAGTTGTAGAAATGCTAATCATGCATATCCCCAACTAGCAGCGAGCAATCACCTCATAGCTTCTGCACCAAAGTCTGAAGGTTTTCTCTCAG TAGTTGCAAATGGGTCATTCCAGCCTGCACCAGCACCTGCTCCAGCACCAGCACCAGCACCAGCACCAGCTCCAATACCAATTCAAACACCTTTAACAAC ATGGATTTCCAATCCTGCAACTGTAACCCACCCAATAGTTCTTGGAGGAGGATTAAATTTCATCGGTCCAAATCCAGGTGTAGCAATGCCAAAAGGTCAT GGGGATTCTGATGTGTCAAGACCAAGAGTTTCTGGGGCTTTGGAAAGGGTAATGTTGGCAGGAAATAGTTCTGGTCAAAATCATTATGGCTTGGCCTTTA ACATGACCGAAGAGTTGCCCAAGACTGTGGCACGGACATTAAATCAAGGCTCAGTTCCCACAAGCATGGATTTCCATCCTATCCAACAGACTCTACTTCT GGTTGGAACTGGTATCGGGGACATTACTTTGTGGGAAGTTAGTTCTAGGGAGAAGTTGGAGTCAAAAAGTTTTCAGGTATGGGATATTGGAGCAAGTTCA ATGGTATTGAAGGCATCTATAATGAAGGACCCATCTGTTTCAGTTAAACGCGTATTATGGAGTCCTGATGGTTCTTTATTTGGGGTTGCATATTCTAAGC ATATAGTACAGATATACACTTATTATGATGGACATGGTATTCGGCATCATATAGAGATTGATGCTCATATTGGAAGTGTAAATGACCTAGCATTTTGCAA TCCCAAGCAACCAGCGGTCATTACTTGTGGTGACGACAAGACCATCAGGGTGTGGGAAGTGGCCACTGGTGCCGAATTGTATACGTTCAAAGGTCATGAA GCTCCTGTTCATTCTGTCTGCCCCCATTCTAGGGAAACTGTTCATTTTGTCTTTTCGACATCAGTGGATGGAAAAATAAAGGCGTGGTTGTATGACATGA TGGGGTCTAGGGTTGATTATGATGCTCCTGGTCGATCATGCTCCACGATGGCATATAGCGCTGATGGGAAAAGGCTATTTTCATGCGGGACCAATCAAGA TGGGGAGTCACACATGGTGGAATGGAATGAAAATGAAGGTACTATAAAGAGAACCTACCAAGGCTTTCACAAGCGTTCTTTGGGTGTTGTTCAATTTGAT ACTACCAAGAATAGATTCTTGGCTGTCGGCGATGACTACTTGATCAAATTCTGGGATATGGATAGTCCTTCTCTTTTGACAACCATTGATGCAGAGGGAG GCCTACCAACAAGTCCACGTATTCGATTCAATAAAGGAGGGAACCTGTTGGCTGTTTCTGCTAATGATAATAGAATCAAAATCTTGGCGACAGTTGATGG TCTCTGTTTGATGCGCACATTTGAAAGCCATTCACTGGTTGCCTCGAGAGTTGGAATTGCATCTGAGGCACCGATAAAGAATGGTGACTCTAGAAGCTCA GAAGGTGTAAAGACAAGGGTGCCTGAAGAAGTACATCCACCAAAGATATGGAAGCTCACTGAGATTAATGATCCTTCCAAGCTTCAGTCATTGAGGCTCT CCACTCGCATTAAAACAGATAAGATTGCAAGGTTGGTCTACACAAATTCAGGCACTGCCATCTTGGCACTTGCATTAAATGCTATTCATCTACTTTGGAA GTGGCCTCGAAATGACCTTAATTCGAGTGGGAAGGCAACAACCAAGGCTGCCCCTCAATTGGTGCAACCAGGATCTGGCGTATTAATGACTAATGATCTA GTTGATGCTAGAACAGAAGAGGCTGTGCCGTGTTTCGCTTTGTCCAAGAATGATTCCTACATCATGTCAGCATCTGGAGGGAAAATTTCCTTGTTCAACA CAATGACATTCAAGACTATGACAGCATTCATGCCTCCACCACCTGCAGCGACGTATCTTGCGTTTCATCCTCAAGATAACAATATTGTTGCAGTGGGAAT GGATGATTCCACAATACACATATATAATGTTCGTGTGGATGAGGTCAAGAGCAAACTTATGGGTCACTCTAAGAGAATCGCTGGTCTTGCCTTCTCTAAC GTGCTGAATACCCTTGTTTCCTCAGGTGCAGATGCTCAGGTTATAGTGTGGAGCACTGATAGGTGGGAAAGGAAGAAGAATTGTGTGTTGCAGATTCCAG CTGGAAGGACACCTCCAGCAATGTCAGGCACCCAAGTCCAGTTTCACCAAGATCAAATCCATTTGCTTGTTGTACATGAGACTCTGCTCGCCATTTATGA AACAACAAAACTTGAATGCTTAAAACAGTGGAACATTGGAGAATTTTCAGCACCTATCTCCCATGCAACATTCTCTTGTGATAGCCAGTTGGTTTATGCC AGCTTCGTGGATGGAACTTTGCGCATATTTGGTGCATCAAATCTTCAAGTGAGATGCCAGATTAATCCAAATGCCTACCTTCAATCAGATGTCGGTTCTT CAGTATATCCACTAGCAGTTGCTGCACATCCCCAAGAACCTAATCAGTTTGCCATCGGCCTAACAGATGGAAGTATTCAAGTTTTCGAGCCTCTTGAATC TGAGGGCAAATGGGGCATGCCCCCACCTGCCGAAAATGGAGCATCAAGTAGCATGCCACCCGCGCCTCCAGCTGTCCCCTTAGATAAACCCCAGAACATG GACTGA
AA sequence Show only first row Show all	>Potri.018G023900.5 pacid=42800996 polypeptide=Potri.018G023900.5.p locus=Potri.018G023900 ID=Potri.018G023900.5.v4.1 annot-version=v4.1 MTSSLSRDLIFLILQFLDEEKFKETAHKLEQESGLFFNAKYFEELVLGGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDKLDRTKAVDILMK DLKVFASFNEDLFKEITQLLTLDNFRENDQLSNYRDTKSARAIMLLELKKLMESNPLFRDKLQYPNIKNSRLRMLINQSLNWQHSLCGNPGQNPDIRTLF VDHSCRNANHAYPQLAASNHLIASAPKSEGFLSVVANGSFQPAPAPAPAPAPAPAPAPIPIQTPLTTWISNPATVTHPIVLGGGLNFIGPNPGVAMPKGH GDSDVSRPRVSGALERVMLAGNSSGQNHYGLAFNMTEELPKTVARTLNQGSVPTSMDFHPIQQTLLLVGTGIGDITLWEVSSREKLESKSFQVWDIGASS MVLKASIMKDPSVSVKRVLWSPDGSLFGVAYSKHIVQIYTYYDGHGIRHHIEIDAHIGSVNDLAFCNPKQPAVITCGDDKTIRVWEVATGAELYTFKGHE APVHSVCPHSRETVHFVFSTSVDGKIKAWLYDMMGSRVDYDAPGRSCSTMAYSADGKRLFSCGTNQDGESHMVEWNENEGTIKRTYQGFHKRSLGVVQFD TTKNRFLAVGDDYLIKFWDMDSPSLLTTIDAEGGLPTSPRIRFNKGGNLLAVSANDNRIKILATVDGLCLMRTFESHSLVASRVGIASEAPIKNGDSRSS EGVKTRVPEEVHPPKIWKLTEINDPSKLQSLRLSTRIKTDKIARLVYTNSGTAILALALNAIHLLWKWPRNDLNSSGKATTKAAPQLVQPGSGVLMTNDL VDARTEEAVPCFALSKNDSYIMSASGGKISLFNTMTFKTMTAFMPPPPAATYLAFHPQDNNIVAVGMDDSTIHIYNVRVDEVKSKLMGHSKRIAGLAFSN VLNTLVSSGADAQVIVWSTDRWERKKNCVLQIPAGRTPPAMSGTQVQFHQDQIHLLVVHETLLAIYETTKLECLKQWNIGEFSAPISHATFSCDSQLVYA SFVDGTLRIFGASNLQVRCQINPNAYLQSDVGSSVYPLAVAAHPQEPNQFAIGLTDGSIQVFEPLESEGKWGMPPPAENGASSSMPPAPPAVPLDKPQNM D

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.018G023900 [exp]	0	1
AT1G79740			hAT transposon superfamily (.1...		Potri.018G135702 [exp]	1.00	0.8934
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	4.24	0.8524
AT1G61310			LRR and NB-ARC domains-contain...		Potri.001G427670 [exp]	5.65	0.8695
AT2G38800			Plant calmodulin-binding prote...		Potri.003G201400 [exp]	6.92	0.8447
AT5G14420		RGLG2	RING domain ligase2 (.1.2.3.4)		Potri.008G183600 [exp]	7.48	0.8329
AT1G80490		TPR1	TOPLESS-related 1 (.1.2)		Potri.006G258100 [exp]	12.84	0.8286
AT3G14470			NB-ARC domain-containing disea...		Potri.012G123400 [exp]	13.41	0.8197
AT5G50760			SAUR-like auxin-responsive pro...		Potri.003G167400 [exp]	13.85	0.8170	SAUR1
AT4G35160			O-methyltransferase family pro...		Potri.013G122000 [exp]	14.73	0.8370
AT4G00980			zinc knuckle (CCHC-type) famil...		Potri.002G171900 [exp]	15.49	0.8384

Compare expression of checked genes

Potri.018G023900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.