Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34940 664 / 0 ATGUS3 glucuronidase 3 (.1.2.3) AT5G61250 508 / 5e-176 ATGUS1 glucuronidase 1 (.1.2) AT5G07830 495 / 6e-171 ATGUS2 glucuronidase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G121500 [exp] 736 / 0 AT5G34940 734 / 0.0 glucuronidase 3 (.1.2.3) Potri.006G062200 [exp] 702 / 0 AT5G34940 729 / 0.0 glucuronidase 3 (.1.2.3) Potri.010G160800 [exp] 516 / 2e-179 AT5G61250 561 / 0.0 glucuronidase 1 (.1.2) Potri.015G049100 [exp] 491 / 1e-169 AT5G07830 731 / 0.0 glucuronidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038109 [exp] 660 / 0 AT5G34940 678 / 0.0 glucuronidase 3 (.1.2.3) Lus10008823 [exp] 657 / 0 AT5G34940 677 / 0.0 glucuronidase 3 (.1.2.3) Lus10008038 [exp] 647 / 0 AT5G34940 671 / 0.0 glucuronidase 3 (.1.2.3) Lus10001923 [exp] 619 / 0 AT5G34940 535 / 0.0 glucuronidase 3 (.1.2.3) Lus10015737 [exp] 518 / 6e-180 AT5G07830 690 / 0.0 glucuronidase 2 (.1) Lus10003468 [exp] 510 / 8e-177 AT5G07830 691 / 0.0 glucuronidase 2 (.1) Lus10021652 [exp] 500 / 1e-172 AT5G07830 722 / 0.0 glucuronidase 2 (.1) Lus10034707 [exp] 494 / 6e-171 AT5G07830 720 / 0.0 glucuronidase 2 (.1) Lus10036963 [exp] 482 / 6e-166 AT5G07830 524 / 0.0 glucuronidase 2 (.1) Lus10037110 [exp] 468 / 2e-160 AT5G07830 528 / 0.0 glucuronidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF03662 [poplar] [flax] Glyco_hydro_79n Glycosyl hydrolase family 79, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G024200.1 pacid=42801396 polypeptide=Potri.018G024200.1.p locus=Potri.018G024200 ID=Potri.018G024200.1.v4.1 annot-version=v4.1 ATGGCGACCTTAAATGCTGATAGAGAGACAAACACAAGGCATTGTTTTTATCAGATGGGCAGTTTGTTCACTGTTTGCGTTTTCTGTGCTTGTTTCTACT GGCTGGGTGCAACCTCAAAATCTGCGGCTTCACAGAGAACAGGAGGGCCTAGAAATATTGTTGAAGGCACTGTTTTTATCAATGGAACAGCTCCAATTGG GACAACAGACCATGATTTTATTTGTGCTACTTTGGACTGGTGGCCTCCCGATAAATGTGACTATGGAACTTGTAGCTGGGGCAAAGCTTCTTTTCTTAAC CTGGATCTTACCAACCCAATATTGTTGAATGCAATCAAAGCCTTTTCTCCTCTGAAAATCAGAATGGGGGGCACTTTACAAGATAAAGTCACATATGAAA GACTAGGTGAACCTTGTCCAACATTTGTCAAAAGTAGTCCAGAAATGTTCGGCTTTTCCCAAGGTTGCTTGCCAATGTCTCGGTGGGATGAATTGAACAA CTTCTTCAAACAAGCCGGGGCTGTTGTTCTTTTCGGGTTAAATGCGTTGAGTGGCAGGACAACAGCGGCAGATGGTTCTGCTGTAGGTGCTTGGAATTCA AGTGATGCTGAATTTCTCATGCGATATTCTGTTAACAAGGGGTACACCATTCACGGTTGGGAGCTTGGAAATGAAGTAAGTGGGAAAGGAATTGGAACAA GAATTGCAGCAGATCAATATGCATCTGACATAAACAATCTGCAGATGATAGTGCAAACTATTTATGCAGGTTTTGAAGTTAAGCCACTAGTCCTAGCACC AGGAGGGTTCTTTGATGCAAACTGGTTCACACAATTTATAAACAAAACACCTAGATCTCTCCAAGTAGTCACCCACCACATTTATAACCTTGGTCCAGGT GTTGATGATCACCTAATTGATAAGATATTGAATCCATCATACCTCGACGGAGGTTCCCAACCATTCAGAAGTCTTCAGGGGATTTTGAAGACTTCAGGGA CTCCAGCTGTTGCTTGGGTTGGTGAGGCAGGAGGTGCTTACAACAGTGGCCATAATCGTGTCACAAATGCATTTGTGTTTAGTTTCTGGTACTTGGACCA GCTAGGCATGGCATCGTCATATGACACAAAAACATATTGTAGACAGACATTGATTGGTGGAAATTATGGCCTTCTTAACACTGGCACCTTTGTCCCTAAT CCTGATTATTACAGTGCTCTTCTGTGGCACCGTTTGATGGGAAGAAATGTTCTGTCAACAACTTTCTCTGGGACTAACAACATACGCGCTTATGCTCACT GTGCAAAAGCATCGAAAGGAATTACATTGCTGTTGATCAACCTCGATGGAAACACTACTGTTGAAGTCCATGTTTCAACTGAAAATGTTACCGGCAATGG AACTTTGGTAACGCAACAACAAAATCAAACAAAGTTTTCTGGGATGTCTAAGGGTTCAAATATCGATGTCAGTACAAGAGAGGAATATCATTTAACGGCC CTGAATGGTGATTTACACAGTCAAACAGTGCTCCTAAATGGGAACATACTTTCTGTAAATTCATCTGGGAGTGTCCCTCCTTTGGAACCAATTGAAACCA GCCAGTCCGATCCAATAACTGTTGCCCCTTTCTCTATTGTATTTGCTCACATTGCTAATTCCACTGTTCCTGCTTGTGAGTATTAG
AA sequence Show only first row Show all	>Potri.018G024200.1 pacid=42801396 polypeptide=Potri.018G024200.1.p locus=Potri.018G024200 ID=Potri.018G024200.1.v4.1 annot-version=v4.1 MATLNADRETNTRHCFYQMGSLFTVCVFCACFYWLGATSKSAASQRTGGPRNIVEGTVFINGTAPIGTTDHDFICATLDWWPPDKCDYGTCSWGKASFLN LDLTNPILLNAIKAFSPLKIRMGGTLQDKVTYERLGEPCPTFVKSSPEMFGFSQGCLPMSRWDELNNFFKQAGAVVLFGLNALSGRTTAADGSAVGAWNS SDAEFLMRYSVNKGYTIHGWELGNEVSGKGIGTRIAADQYASDINNLQMIVQTIYAGFEVKPLVLAPGGFFDANWFTQFINKTPRSLQVVTHHIYNLGPG VDDHLIDKILNPSYLDGGSQPFRSLQGILKTSGTPAVAWVGEAGGAYNSGHNRVTNAFVFSFWYLDQLGMASSYDTKTYCRQTLIGGNYGLLNTGTFVPN PDYYSALLWHRLMGRNVLSTTFSGTNNIRAYAHCAKASKGITLLLINLDGNTTVEVHVSTENVTGNGTLVTQQQNQTKFSGMSKGSNIDVSTREEYHLTA LNGDLHSQTVLLNGNILSVNSSGSVPPLEPIETSQSDPITVAPFSIVFAHIANSTVPACEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G34940		ATGUS3	glucuronidase 3 (.1.2.3)		Potri.018G024200 [exp]	0	1
AT2G15080		AtRLP19	receptor like protein 19 (.1.2...		Potri.011G104600 [exp]	4.47	0.8623
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.017G018700 [exp]	8.94	0.8491
AT5G36930			Disease resistance protein (TI...		Potri.011G008868 [exp]	9.94	0.8572
AT1G20225			Thioredoxin superfamily protei...		Potri.002G017500 [exp]	13.41	0.8202
AT5G48850		ATSDI1	SULPHUR DEFICIENCY-INDUCED 1, ...		Potri.002G240700 [exp]	19.36	0.7965
AT5G36930			Disease resistance protein (TI...		Potri.007G143300 [exp]	19.87	0.8450
AT5G36930			Disease resistance protein (TI...		Potri.006G283400 [exp]	21.81	0.7798
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094600 [exp]	26.26	0.8443
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094700 [exp]	34.08	0.8084
AT1G29740			Leucine-rich repeat transmembr...		Potri.011G073700 [exp]	36.66	0.7228

Compare expression of checked genes

Potri.018G024200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.