Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G31170 857 / 0 FIONA, SYCOARATH ,SYCO ARATH cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) AT5G38830 557 / 0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT3G56300 493 / 2e-170 Cysteinyl-tRNA synthetase, class Ia family protein (.1) AT1G09620 43 / 0.0006 ATP binding;leucine-tRNA ligases;aminoacyl-tRNA ligases;nucleotide binding;ATP binding;aminoacyl-tRNA ligases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G122500 [exp] 639 / 0 AT5G38830 682 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Potri.008G122901 [exp] 0 / 1 AT5G38830 0 / 1 Cysteinyl-tRNA synthetase, class Ia family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001921 [exp] 857 / 0 AT2G31170 831 / 0.0 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10041428 [exp] 613 / 0 AT5G38830 687 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10034343 [exp] 608 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10010336 [exp] 605 / 0 AT5G38830 684 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10021862 [exp] 605 / 0 AT5G38830 686 / 0.0 Cysteinyl-tRNA synthetase, class Ia family protein (.1) Lus10001953 [exp] 322 / 5e-106 AT2G31170 305 / 5e-102 cysteinyl t-RNA synthetase, FIONA, Cysteinyl-tRNA synthetase, class Ia family protein (.1.2) Lus10001954 [exp] 239 / 2e-71 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF01406 [poplar] [flax] tRNA-synt_1e tRNA synthetases class I (C) catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.018G024300.2 pacid=42802183 polypeptide=Potri.018G024300.2.p locus=Potri.018G024300 ID=Potri.018G024300.2.v4.1 annot-version=v4.1 ATGGGCAGTCTTTACAGATACTACAAACCCCTGACCTCAATCTGCTTCTCTCCACCGCCTACAAAATCTTACCTCCTCCATTCAATCAAATTCAAAACCC ATTTTTCTCCCACCAAGAAGACAAGACTACACCGTTTCTTCACCTCTCTAACATCATCATCACTGCCCTCAATCAAAACCAACGGTGGAGATGCCTCTGC TGCAAGTCAATCATCAGAACTGTGGCTATACAACACAATGAGTAGAAAAAAAGAGCTATTTAAGCCAAAAGTCGAGGGTAAAGTTGGAATGTATGTTTGT GGTGTCACTGCTTATGATTTGAGCCATATTGGACATGCTCGTGTATATGTTACCTTTGATGTTTTATTAAGGTATCTAAAGCATTTGGGGTTTGATGTTC ATTATGTTCGAAATTTCACCGATGTTGATGATAAGATAATTGCTCGAGCGAATGAATTAGGAGAGGATCCGATCAGTTTGAGTAAACGGTACTGTGAAGA ATTCCTTCATGATATGGTGTATCTTCATTGCCTTCCGCCTTCTGTTGAGCCACGTGTGTCAGATCACATGCCCCAAATAATTGATATGATTGAGCGGATT CTTGAGAATGGATATGCCTACAGAATTGATGGGGATGTCTACTTTTCTGTTGACAAATTACCAGAATACGGGCGATTGTCTGGACGAAAATTAGAAGATA ATCGAGCTGGTGAACGAGTTGCTGTGGACTCGAGAAAGAAAAACCCTGCTGATTTTGCATTGTGGAAGTCTGCGAAGGAGGGTGAGCCCTTTTGGGACAG TCCATGGGGTCCTGGAAGACCTGGGTGGCATATCGAGTGCAGTGCCATGAGTGCTGCTTATCTTGGTCACTCTTTTGACATACATGGTGGTGGAATGGAC CTTGTGTTTCCCCATCATGAAAACGAAATTGCTCAGAGCTGTGCTGCATGCAGAGATAGCAATATAAGCTACTGGGTACACAATGGTTTTGTCACTATTG ACTCAGAGAAAATGTCCAAATCCTTAGGAAACTTCTTCACAATTAGGCAGGTTATAAATCTTTACCATCCATTAGCTTTGAGACTTTTCCTGTTGGGGAC CCACTATAGATCCCCAGTCAACTACTCTGACGTGCAGCTTGAAAGTGCTTCAGAACGTATATTTTACATCTATCAGACGCTACATGATTGTGAAAATATT CTCAGCCAGCATCGTGTGGCATTTGAGAAGGATGCTATCCCGCCTGACACTATAAATGACATCAATAAGTTTCATGATACACTTGTCACCTCGATGTCAG ATGATCTCCACACTCCTGTTCTTTTGTCTGCACTATCTGACCCATTAAAAATCATTAATGATATGCTACACACTCGAAAGGGAAAGAAACAAATAAAGCG AATAGAGTCAATTGCTGCTCTGGAAAAGATGGTCAGAAATGCTCTTATGGTCTTAGGGTTGATGCCCCCAACTTATAATGAGGCTCTGCAGCAATTGAGG GAAAAGGCACTGAGGCGTGCAAAGCTGACAGAAGATCAAATATTGCAAAAAATCGAGGAAAGGACTGTAGCAAGAAAGGACAAAGACTATGAAAAATCAG ATGCTATTAGGAAGGATTTAGCTGCTTTGGGCATTGCTCTTATGGATAGTCCAGATGGCACAAGTTGGAGACCAGCCATTCCGCTTGCTTTGCAAGAGCA GCAAGTTGCTTCAACTTGA
AA sequence Show only first row Show all	>Potri.018G024300.2 pacid=42802183 polypeptide=Potri.018G024300.2.p locus=Potri.018G024300 ID=Potri.018G024300.2.v4.1 annot-version=v4.1 MGSLYRYYKPLTSICFSPPPTKSYLLHSIKFKTHFSPTKKTRLHRFFTSLTSSSLPSIKTNGGDASAASQSSELWLYNTMSRKKELFKPKVEGKVGMYVC GVTAYDLSHIGHARVYVTFDVLLRYLKHLGFDVHYVRNFTDVDDKIIARANELGEDPISLSKRYCEEFLHDMVYLHCLPPSVEPRVSDHMPQIIDMIERI LENGYAYRIDGDVYFSVDKLPEYGRLSGRKLEDNRAGERVAVDSRKKNPADFALWKSAKEGEPFWDSPWGPGRPGWHIECSAMSAAYLGHSFDIHGGGMD LVFPHHENEIAQSCAACRDSNISYWVHNGFVTIDSEKMSKSLGNFFTIRQVINLYHPLALRLFLLGTHYRSPVNYSDVQLESASERIFYIYQTLHDCENI LSQHRVAFEKDAIPPDTINDINKFHDTLVTSMSDDLHTPVLLSALSDPLKIINDMLHTRKGKKQIKRIESIAALEKMVRNALMVLGLMPPTYNEALQQLR EKALRRAKLTEDQILQKIEERTVARKDKDYEKSDAIRKDLAALGIALMDSPDGTSWRPAIPLALQEQQVAST

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G31170		FIONA, SYCOARAT...	cysteinyl t-RNA synthetase, FI...		Potri.018G024300 [exp]	0	1
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Potri.010G022400 [exp]	3.46	0.9660
AT5G04130		GYRB2	DNA GYRASE B2 (.1.2)		Potri.016G036200 [exp]	5.65	0.9586
AT1G74850		PDE343, PTAC2	PIGMENT DEFECTIVE 343, plastid...		Potri.015G069100 [exp]	5.65	0.9613
AT1G36320			unknown protein		Potri.005G170400 [exp]	6.48	0.9480
AT1G06730			pfkB-like carbohydrate kinase ...		Potri.005G220400 [exp]	7.21	0.9607
AT1G70070		ISE2, EMB25, PD...	PIGMENT DEFECTIVE 317, INCREAS...		Potri.010G038500 [exp]	9.32	0.9613
AT4G36390			Methylthiotransferase (.1)		Potri.007G018500 [exp]	9.94	0.9559
AT3G59040			Tetratricopeptide repeat (TPR)...		Potri.001G220300 [exp]	13.41	0.9594
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Potri.008G224900 [exp]	14.31	0.9598
AT3G13490		ATKRS-2, OVA5	OVULE ABORTION 5, ARABIDOPSIS ...		Potri.003G221600 [exp]	15.96	0.9280

Compare expression of checked genes

Potri.018G024300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.