Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G38690 271 / 9e-82 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67270 249 / 8e-74 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT1G67780 236 / 1e-69 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) AT2G23530 100 / 6e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT4G37110 96 / 7e-21 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) AT1G09060 48 / 3e-05 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257400 [exp] 932 / 0 AT5G38690 270 / 2e-81 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Potri.007G036200 [exp] 102 / 2e-22 AT2G23530 320 / 6e-102 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.009G108400 [exp] 97 / 2e-21 AT2G23530 253 / 8e-79 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.012G044400 [exp] 78 / 1e-15 AT4G37110 96 / 2e-22 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Potri.013G019000 [exp] 43 / 0.0009 AT1G09060 996 / 0.0 Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10017575 [exp] 297 / 2e-91 AT5G38690 409 / 8e-137 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10033539 [exp] 290 / 3e-88 AT5G38690 405 / 2e-134 Zinc-finger domain of monoamine-oxidase A repressor R1 protein (.1) Lus10000845 [exp] 102 / 5e-23 AT2G23530 303 / 8e-98 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10019647 [exp] 102 / 8e-23 AT2G23530 301 / 5e-97 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10023846 [exp] 96 / 3e-21 AT2G23530 272 / 2e-87 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10021004 [exp] 60 / 2e-10 AT4G37110 110 / 7e-29 Zinc-finger domain of monoamine-oxidase A repressor R1 (.1) Lus10025454 [exp] 45 / 0.0003 AT1G28420 1275 / 0.0 homeobox-1 (.1) Lus10015325 [exp] 44 / 0.0004 AT1G28420 1273 / 0.0 homeobox-1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10497 [poplar] [flax] zf-4CXXC_R1 Zinc-finger domain of monoamine-oxidase A repressor R1
Representative CDS sequence Show only first row Show all	>Potri.018G024400.4 pacid=42800671 polypeptide=Potri.018G024400.4.p locus=Potri.018G024400 ID=Potri.018G024400.4.v4.1 annot-version=v4.1 ATGGCAGTTACTTCAAGTCCTGTTGCGTTGAAAGAAAAAGAGGTTGTAGAGAAGAGGAGTCGGTCAAAACGTCCTGGAGTTCGTGTTGTTGGAGGGAGGA TCTATGATTCTGATAATGGGAAGACTTGTCATCAATGCCGCCAAAAAACAATGGATTTTGCGGCAGCTTGTGCAATTCAGAAAGGAAACAAACTATGTAC TCTCAAGTTCTGCCACAAATGCCTATTAAACAGATACGGAGAGAAAGCAGAAGATGTAGCATTGTTGGATGACTGGCAGTGTCCCAAGTGTAGGGGCATT TGCAACTGTAGCTTCTGCATGAAGAAACGAGGCCACAAGCCCACTGGAATACTTGTCTACACAGCCAAGGAAAATGGGTTTTGTTCTGTCTCAGAACTGC TGCAGATTAAAGGTTCTGAAAATTTGAATCACAACAAGGATGTGAAAGCCAGTGATGGTTCGTCAAAGAGTGCGTCGTCATATAAGGAGTCTACAGTCGC TTCTCCATGGAAACCAGGGAAGGAAAATTCTTTTGATGGAAACATTGAAACGAATCTGCATCCTCAGAATTTAACACCCATCTCTGCCGAGAAGAAATCT AAGAAAACAAAACGGAAAGGACTGAAGGAAGTTGGTAGTGGTAACAGGGATGCTGAAATTAATTTAGAGGAGAGTGGTCAGAAGAAAACAAAAAGGGAAG GACTAGGGAAAGTTAGTAATGGCAGTACGAAGGGTGGTTATAAGAAGCCTCTAATTACTGAAGATGTTTATGAAAATGAAATGAAGACCAATGAGAAAGA TAAAGGTGATGTTGCAAAGGAAAAGAAGTCTAAGACAAAGTCCATGGAACTTTCCAAGGACAAAGTGAAGGAAAACAAGAAGCATGAAGATGTTTCTGAA AAGAAAAGGAAGACTAAGGCACATCCTCAGGAAATTTCTAAGAAAGAATTGAAAAATGGAAAGAATGAAGATGCTTTTGTTGAGAAAAGGAGGACCAAGA CACAGCCTCAAGAGGTTTCCCAGAATGAAGTTTTACTTGGTGCAAATTGTAATGGTGGACTAGTTTGTGGCTTTAGAAGTGATAAAATTCAAACGGAGAC CAAGATGGCTGGAGACTCATGCAAAGTTGACAAGTTTCCTGCAGAATCTCAAACCACAGCCAATGAGAGGCGTACCAAGAAACTTCAGAACAAAGAAATT GACGTGGACATTCAATTGCCTCAGGGAACCTGCTTAACGGCTGTAGCAGGCATTGAGTTACCTCCCGAGACTGTTGGTAATGCATTGCAATTCTTGGAAT TTTGTGCTAGTTTTGGTAAGGTTCTTGGTCTGAAGAAGGGGCAAGCTGAAATTGCACTCAGGGAAATAATAAATGGACGAAGAGGGCGTCGGTTGCAATC CTATCATCTAGCCCAGATTCATGTTCAGCTACTGTCTCTGATTCAAAAGGATATAGGAGAAGAATCTCCAACCCTAACTACAACAAATGAAAACTCATGG TTTCAAGCTCTCAGGAAATCTGTCTCGAAATGCCATTTCTTATCAAAAGAACTTCCCTCTAATTGTTTTGACTGGGGTAATGAAGGATATGATAAGTTAA ACAGCTCAGAAAAGCTTAGACTCTTGAATCTTATATGTGATGAAGCTCTTAATACCAAAGAGTTGCGCAGTTGGATTGATGATGAAAACTCTAAATTTCT TGAAAGACAGAAGGAAGCCAAAGAAAAAGTTCTTGCAGCAAAGGATAAGGAGAAAAAATTGAAACAGAAGATGCTAGACGAGGTGGCCAAAGCTATTATT GAGAAAAATGGCGCTCCCATTTCTGTTTCTAACCATAAAGAAATGGTTTCACGAATAAAAAGTGAAGCTGCACAAGCCCACTCAGAAATGCTGGAGGCCA TGGCACTGAAGAAGGGATTATTATCCAATGCTGTCAGAACAGAGCCTGTCCTTCTGGACGTTGATGGCCGAGCTTTCTGGAAACTAAATGGCTACAATGG TCAATCAGATATTCTGCTTCAAGATATGGGTACATGGAATTCTGTTGCACCAAGTGAAAAATGGTTAGTATATGCTGATGAACAGAAACTGGAAATTGAG AAATACATCACTTCCTCGAGGACAAAAAGGCTTAGGGTTCAAAAAGCTAGCGAAACCCCTTCAATCGACGCATTAAAATAA
AA sequence Show only first row Show all	>Potri.018G024400.4 pacid=42800671 polypeptide=Potri.018G024400.4.p locus=Potri.018G024400 ID=Potri.018G024400.4.v4.1 annot-version=v4.1 MAVTSSPVALKEKEVVEKRSRSKRPGVRVVGGRIYDSDNGKTCHQCRQKTMDFAAACAIQKGNKLCTLKFCHKCLLNRYGEKAEDVALLDDWQCPKCRGI CNCSFCMKKRGHKPTGILVYTAKENGFCSVSELLQIKGSENLNHNKDVKASDGSSKSASSYKESTVASPWKPGKENSFDGNIETNLHPQNLTPISAEKKS KKTKRKGLKEVGSGNRDAEINLEESGQKKTKREGLGKVSNGSTKGGYKKPLITEDVYENEMKTNEKDKGDVAKEKKSKTKSMELSKDKVKENKKHEDVSE KKRKTKAHPQEISKKELKNGKNEDAFVEKRRTKTQPQEVSQNEVLLGANCNGGLVCGFRSDKIQTETKMAGDSCKVDKFPAESQTTANERRTKKLQNKEI DVDIQLPQGTCLTAVAGIELPPETVGNALQFLEFCASFGKVLGLKKGQAEIALREIINGRRGRRLQSYHLAQIHVQLLSLIQKDIGEESPTLTTTNENSW FQALRKSVSKCHFLSKELPSNCFDWGNEGYDKLNSSEKLRLLNLICDEALNTKELRSWIDDENSKFLERQKEAKEKVLAAKDKEKKLKQKMLDEVAKAII EKNGAPISVSNHKEMVSRIKSEAAQAHSEMLEAMALKKGLLSNAVRTEPVLLDVDGRAFWKLNGYNGQSDILLQDMGTWNSVAPSEKWLVYADEQKLEIE KYITSSRTKRLRVQKASETPSIDALK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G38690			Zinc-finger domain of monoamin...		Potri.018G024400 [exp]	0	1
AT5G58630			unknown protein		Potri.009G046900 [exp]	2.82	0.8370
AT1G69770		CMT3	chromomethylase 3 (.1)		Potri.001G009600 [exp]	4.24	0.8964
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	8.60	0.8617	CPE902,Pt-SMC2.2
					Potri.001G151601 [exp]	10.19	0.7885
AT3G22780	CPP	ATTSO1, TSO1	CHINESE FOR 'UGLY', Tesmin/TSO...		Potri.006G251200 [exp]	13.85	0.8534	Pt-CPP1.22
AT4G36930	bHLH	SPT, bHLH024	SPATULA, basic helix-loop-heli...		Potri.014G025800 [exp]	16.06	0.8435	ALC.2
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G055900 [exp]	16.85	0.8490
AT1G76740			unknown protein		Potri.002G066450 [exp]	18.70	0.7719
AT3G27060		ATTSO2, TSO2	TSO MEANING 'UGLY' IN CHINESE ...		Potri.017G063900 [exp]	20.49	0.8428
AT1G78700	BZR	BEH4	BES1/BZR1 homolog 4 (.1)		Potri.011G071800 [exp]	22.58	0.7613

Compare expression of checked genes

Potri.018G024400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.