Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32120 538 / 0 Galactosyltransferase family protein (.1) AT2G25300 523 / 0 Galactosyltransferase family protein (.1) AT5G53340 311 / 5e-105 Galactosyltransferase family protein (.1.2) AT1G05170 232 / 3e-73 Galactosyltransferase family protein (.1.2) AT2G32430 220 / 2e-68 Galactosyltransferase family protein (.1) AT1G77810 219 / 2e-68 Galactosyltransferase family protein (.1.2) AT1G32930 216 / 6e-67 Galactosyltransferase family protein (.1) AT1G11730 215 / 7e-67 Galactosyltransferase family protein (.1) AT1G33430 209 / 2e-64 Galactosyltransferase family protein (.1.2) AT4G26940 207 / 2e-63 Galactosyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257200 [exp] 652 / 0 AT4G32120 556 / 0.0 Galactosyltransferase family protein (.1) Potri.003G136000 [exp] 341 / 2e-116 AT5G53340 484 / 3e-173 Galactosyltransferase family protein (.1.2) Potri.015G023700 [exp] 318 / 1e-107 AT5G53340 521 / 0.0 Galactosyltransferase family protein (.1.2) Potri.011G004200 [exp] 233 / 1e-73 AT1G05170 520 / 0.0 Galactosyltransferase family protein (.1.2) Potri.014G153700 [exp] 231 / 9e-73 AT1G05170 699 / 0.0 Galactosyltransferase family protein (.1.2) Potri.004G013900 [exp] 226 / 6e-71 AT1G05170 547 / 0.0 Galactosyltransferase family protein (.1.2) Potri.005G171400 [exp] 223 / 7e-70 AT1G77810 594 / 0.0 Galactosyltransferase family protein (.1.2) Potri.002G089800 [exp] 223 / 1e-69 AT1G77810 611 / 0.0 Galactosyltransferase family protein (.1.2) Potri.001G450200 [exp] 221 / 5e-69 AT1G32930 625 / 0.0 Galactosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001920 [exp] 514 / 0 AT4G32120 541 / 0.0 Galactosyltransferase family protein (.1) Lus10001954 [exp] 451 / 8e-157 AT4G32120 489 / 8e-172 Galactosyltransferase family protein (.1) Lus10014945 [exp] 312 / 4e-105 AT5G53340 469 / 4e-167 Galactosyltransferase family protein (.1.2) Lus10032350 [exp] 302 / 6e-101 AT5G53340 419 / 5e-147 Galactosyltransferase family protein (.1.2) Lus10033935 [exp] 296 / 4e-99 AT5G53340 415 / 6e-146 Galactosyltransferase family protein (.1.2) Lus10038830 [exp] 268 / 1e-87 AT5G53340 421 / 4e-148 Galactosyltransferase family protein (.1.2) Lus10040062 [exp] 230 / 3e-72 AT1G05170 647 / 0.0 Galactosyltransferase family protein (.1.2) Lus10020042 [exp] 218 / 2e-68 AT1G05170 503 / 2e-179 Galactosyltransferase family protein (.1.2) Lus10006933 [exp] 217 / 2e-67 AT1G77810 602 / 0.0 Galactosyltransferase family protein (.1.2) Lus10024750 [exp] 217 / 3e-67 AT1G77810 599 / 0.0 Galactosyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01762 [poplar] [flax] Galactosyl_T Galactosyltransferase CL0110 [poplar] [flax] PF13334 [poplar] [flax] DUF4094 Domain of unknown function (DUF4094)
Representative CDS sequence Show only first row Show all	>Potri.018G024500.6 pacid=42802128 polypeptide=Potri.018G024500.6.p locus=Potri.018G024500 ID=Potri.018G024500.6.v4.1 annot-version=v4.1 ATGGAGAGCAGTATACCGTTATCGACAAAACCAGAGCGGCGATGGAGATCGAAGCCGTTACAGACCTCTAAACCTTCTCTTTTCCTAGCTTTCTTCTCTT GCTTCGCTTGGCTCTACGTTGCTGGCCGGTTATGGCAAGACGCAGAGAACAGAACATTACTTTCTAATCTTCTACAGAGAAATGTAGCTCAGGGATCGAA GTTGCTTACAGTCGAAGATAAGCTAGTTGTGCTAGGATGCAAGGATTTGGAGAGGAGGATAGTGGAGGCAGAAATGGAATTGACGTTGGCTAAGAGTCAA GGGTACATAAAAAGTCGGCTGTCACAAAATGAGTCTTCGTCGGGTAAAAAGTTTCTTGCAGTCATTGGTGTATATACTGGATTTGGTAGTCACTTGAAGC GGAAGGTGTTTAGAGGGTCTTGGATGCCAAGAGGTGATGCCTTAAAAAAGCTTGAGGAAAGAGGAGTAGTAATCCGTTTTGTGATTGGTCGCAGTGCTAA TCGAGGGGATAGCTTAGATCGAAATATCAATGGTGAAAATCGTTCAACAAAGGATTTCTTGATTCTTGAAGGTCATGAGGAGGCTCAAGAAGAATTGCCC AAGAAAGTGAAGTCCTTCTTTAGCACTGCTGTGCAAACATGGGATGCGGAATTTTATGTAAAAGCTGATAACAATATTAACCTTGATCTTGAGGGATTAA TTGAACTTCTTGAACATCGTCGCAGTCAAGCTAGTGCTTACATTGGCTGTATGAAATCTGGAGAAGTTATAACTGAAGAGGGAAGCCCATGGTATGAACC TGAATGGTGGAAATTTGGAGATGAAAAATCGTACTTCCAACATGCGGCTGGTTCACTTCTTATACTCTCCAAAAAATTAGCTCGGTATATTGACATAAAC AGCGCATCTCTAAAGACTTATGCTCATGACGATACATCAGTGGGATCCTGGATGATGGGTCTCCAAGCAACCTATATAGATGACAATCGTCTTTGCTGCA GTAGCATTAAACAAGACAAGGTTTGTTCCCAGGCTTGA
AA sequence Show only first row Show all	>Potri.018G024500.6 pacid=42802128 polypeptide=Potri.018G024500.6.p locus=Potri.018G024500 ID=Potri.018G024500.6.v4.1 annot-version=v4.1 MESSIPLSTKPERRWRSKPLQTSKPSLFLAFFSCFAWLYVAGRLWQDAENRTLLSNLLQRNVAQGSKLLTVEDKLVVLGCKDLERRIVEAEMELTLAKSQ GYIKSRLSQNESSSGKKFLAVIGVYTGFGSHLKRKVFRGSWMPRGDALKKLEERGVVIRFVIGRSANRGDSLDRNINGENRSTKDFLILEGHEEAQEELP KKVKSFFSTAVQTWDAEFYVKADNNINLDLEGLIELLEHRRSQASAYIGCMKSGEVITEEGSPWYEPEWWKFGDEKSYFQHAAGSLLILSKKLARYIDIN SASLKTYAHDDTSVGSWMMGLQATYIDDNRLCCSSIKQDKVCSQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32120			Galactosyltransferase family p...		Potri.018G024500 [exp]	0	1
AT5G61970			signal recognition particle-re...		Potri.012G106200 [exp]	2.44	0.9111
AT2G03480		QUL2	QUASIMODO2 LIKE 2 (.1.2)		Potri.010G159400 [exp]	4.58	0.9330
AT2G40730		CTEXP	cytoplasmic tRNA export protei...		Potri.013G090500 [exp]	4.69	0.9293
AT1G20540			Transducin/WD40 repeat-like su...		Potri.002G011200 [exp]	4.89	0.9063
AT1G50500		ATVPS53, HIT1	HEAT-INTOLERANT 1, ARABIDOPSIS...		Potri.016G023000 [exp]	5.19	0.9003
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Potri.001G214800 [exp]	7.93	0.9010
AT3G19420		PTEN2A, ATPEN2	phosphatase and TENsin homolog...		Potri.007G047900 [exp]	11.48	0.9046
AT1G73430			sec34-like family protein (.1....		Potri.010G138900 [exp]	19.41	0.8884
AT3G61130		GAUT1, LGT1	galacturonosyltransferase 1 (....		Potri.002G151400 [exp]	23.23	0.9056
AT2G23380		SET1, SDG1, ICU...	SETDOMAIN 1, SETDOMAIN GROUP 1...		Potri.007G045800 [exp]	24.73	0.8979	Pt-CLF.1

Compare expression of checked genes

Potri.018G024500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.