Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25310 250 / 5e-85 Protein of unknown function (DUF2012) (.1) AT4G32130 245 / 5e-83 Protein of unknown function (DUF2012) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G257100 [exp] 320 / 2e-112 AT2G25310 253 / 4e-86 Protein of unknown function (DUF2012) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001919 [exp] 251 / 2e-85 AT2G25310 263 / 3e-90 Protein of unknown function (DUF2012) (.1) Lus10001955 [exp] 247 / 1e-83 AT2G25310 261 / 1e-89 Protein of unknown function (DUF2012) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [poplar] [flax] Transthyretin PF09430 [poplar] [flax] DUF2012 Protein of unknown function (DUF2012)
Representative CDS sequence Show only first row Show all	>Potri.018G024600.1 pacid=42801074 polypeptide=Potri.018G024600.1.p locus=Potri.018G024600 ID=Potri.018G024600.1.v4.1 annot-version=v4.1 ATGGCATCGTTTGTAAGATCGAAACCGGTGATTCTCCTCCTCGTCGTTCAACTATGCCTCTCTCTTCTCTCTCCATCCCTCGCAATTTCATCTGGGTCTT CTGGTGATGGTTACGCAATCAACGGTAGAGTGAAGATCCCAGGTATTGATGCAAAAGGACTTGGAGGTCATGGAAAGATATCCAATGTCAAAGTTATACT AAATGGTGGCCAACATGTTACCTTTCTGAGGCCTGATGGATATTTTTCATTTCATAATGTGCCAGCGGGGACCCATTTAATTGAAGTGGTTGCTACCGGC TATTTCTTTTCTCCAGTCCGAGTCGATGTTAGTGCTAGATTCCCGGGTAAGGTTCAGGCAACACTAACGGAGAAAAGGAGGAGTCTGAGTGAAATGGTAT TAGAGCCATTAAAGGAAGAGCAGTATTATGAGATTAGGGAGCCCTTCTCCATAATGTCTCTTGTCAAAAGTCCGATGGGTCTCATGATGGGATTTATGGT GTTGGTTATGTTTGTGATGCCAAAATTAATGGAAAACATGGATCCTGAAGAAATGAAGAGAGCACAAGAAGAAATGAGAAACCAAGGAGTTCCATCCCTA GCAAGTATGTTGCCAGGAGCTGCAAGGAGCAATAATTAG
AA sequence Show only first row Show all	>Potri.018G024600.1 pacid=42801074 polypeptide=Potri.018G024600.1.p locus=Potri.018G024600 ID=Potri.018G024600.1.v4.1 annot-version=v4.1 MASFVRSKPVILLLVVQLCLSLLSPSLAISSGSSGDGYAINGRVKIPGIDAKGLGGHGKISNVKVILNGGQHVTFLRPDGYFSFHNVPAGTHLIEVVATG YFFSPVRVDVSARFPGKVQATLTEKRRSLSEMVLEPLKEEQYYEIREPFSIMSLVKSPMGLMMGFMVLVMFVMPKLMENMDPEEMKRAQEEMRNQGVPSL ASMLPGAARSNN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25310			Protein of unknown function (D...		Potri.018G024600 [exp]	0	1
AT3G22950		ATARFC1	ADP-ribosylation factor C1 (.1...		Potri.015G142600 [exp]	1.73	0.8600
AT2G30942			Protein of unknown function (D...		Potri.001G000400 [exp]	2.23	0.8508
AT5G67590		FRO1	FROSTBITE1, NADH-ubiquinone ox...		Potri.007G005100 [exp]	2.64	0.8973
AT1G07960		ATPDIL5-1	PDI-like 5-1 (.1.2.3)		Potri.009G004500 [exp]	4.69	0.8624
AT2G44360			unknown protein		Potri.001G230100 [exp]	6.92	0.8463
AT3G05000			Transport protein particle (TR...		Potri.005G044300 [exp]	11.22	0.8120
AT1G67785			unknown protein		Potri.015G087301 [exp]	13.41	0.8578
AT2G21600		ATRER1B	endoplasmatic reticulum retrie...		Potri.002G034200 [exp]	14.14	0.7935	Pt-RER1.5
AT3G05000			Transport protein particle (TR...		Potri.013G031000 [exp]	14.24	0.8400
AT1G15120			Ubiquinol-cytochrome C reducta...		Potri.002G069200 [exp]	15.90	0.8278

Compare expression of checked genes

Potri.018G024600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.