Plant FIBer expression Database

Potri.018G024700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G32140 581 / 0 EamA-like transporter family (.1)
AT3G07080 99 / 1e-22 EamA-like transporter family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G257000
[exp]
686 / 0 AT4G32140 566 / 0.0 EamA-like transporter family (.1)
Potri.006G266400
[exp]
411 / 1e-142 AT4G32140 397 / 6e-137 EamA-like transporter family (.1)
Potri.014G189500
[exp]
114 / 4e-28 AT3G07080 477 / 2e-167 EamA-like transporter family (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006194
[exp]
601 / 0 AT4G32140 610 / 0.0 EamA-like transporter family (.1)
Lus10041032
[exp]
587 / 0 AT4G32140 607 / 0.0 EamA-like transporter family (.1)
Lus10042422
[exp]
362 / 1e-119 AT4G32140 390 / 3e-130 EamA-like transporter family (.1)
Lus10026249
[exp]
295 / 3e-97 AT4G32140 320 / 3e-107 EamA-like transporter family (.1)
Lus10011864
[exp]
105 / 8e-25 AT3G07080 453 / 1e-158 EamA-like transporter family (.1)
Lus10022798
[exp]
66 / 1e-11 AT3G07080 342 / 5e-116 EamA-like transporter family (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0184 DMT PF00892 EamA EamA-like transporter family
Representative CDS sequence
>Potri.018G024700.1 pacid=42800781 polypeptide=Potri.018G024700.1.p locus=Potri.018G024700 ID=Potri.018G024700.1.v4.1 annot-version=v4.1
ATGGGTTGGAGATATAAAGCTGGTTTGTTCTTGATAGCTGCTGTTGTTATTATATGGGTCACCTCTGCTGAAGTTACCCAGGATATCTTTGCAGATTATA
AGCAACCATTTGCAGTGACATATCTTGGAGCTTCTCTTATGGTGGTTTACCTCCCATTGGCATTCCTTAAAGACTGGATATGTAATCTGCTAAAACGACG
GACTTCTAAAAGTGGTAATGATGCAGCCAACATAAATGGGTCATCCGATGAATTTAGCTCTCCTTTAAGTCACAAAATCTTTGAACTGGAACTTCAGGGA
GCTTTGACGAAAAAAGGCAGTGAACTGGACCTTACATCTTCAGAAGAAGGAAGGCCTTTAGTTTCTAGACACAAGGATGATTTGAATGTTCTGAAACATG
AAAAAGAGCTCACAGCCAGAGAAATTGCTATGTGTGGTTTTTATATTGCCCCTATCTGGTTTGTAACAGAGTACCTATCAAATGCTGCACTAGCACGAAC
GAGTGTTGCGAGTACTACAGTTTTGTCATCAACTTCTGGACTTTTTACTCTTTTCATTGGTGCATTTTTGGGTCAAGATTCTTTAAATGCAGCAAAGGTG
ATAGCTGTCCTGGTGAGCATGGCTGGTGTTGCCATGACTACTTTGGGAAAAACATGGGCTGCTGATGACTCACAACTAAGTGCTTCTGCAAATGGCAAAC
GCTCTCTTGTTGGGGATCTTTTTGGGCTTCTCTCAGCCATGTCATACGGACTATTTACAGTTCTTCTTAAAAAGTTTGCTGGAGAAGAAGGAGAAAGGGT
TGATGTGCAAAAGTTGTTCGGATATATAGGATTGTTTACTCTAGTAGCTCTGTGGTGGCTTGTTTGGCCATTGACAGCCTTGGGAATTGAACCCAAGTTT
ACAATCCCTCACTCTGCTAAACTGGATGAAATAGTTCTTGCCAACGGCTTTGTTGGAAGTGTCCTCTCTGACTACTTTTGGGCATTATGTGTTGTATGGA
CAACTCCATTGGTGGCCACCTTGGGCATGTCCCTCACCATCCCTCTTGCTATGCTAGCTGATATGGTGATTCATGGCCGTCATTATTCAGCAATTTACAT
CCTTGGTTCTGTTCAGGTTTTTGTTGGGTTCGTGATAGCTAATCTTTCTAATTGGTTCTCGAAAAAGTTAGGGTTATAG
AA sequence
>Potri.018G024700.1 pacid=42800781 polypeptide=Potri.018G024700.1.p locus=Potri.018G024700 ID=Potri.018G024700.1.v4.1 annot-version=v4.1
MGWRYKAGLFLIAAVVIIWVTSAEVTQDIFADYKQPFAVTYLGASLMVVYLPLAFLKDWICNLLKRRTSKSGNDAANINGSSDEFSSPLSHKIFELELQG
ALTKKGSELDLTSSEEGRPLVSRHKDDLNVLKHEKELTAREIAMCGFYIAPIWFVTEYLSNAALARTSVASTTVLSSTSGLFTLFIGAFLGQDSLNAAKV
IAVLVSMAGVAMTTLGKTWAADDSQLSASANGKRSLVGDLFGLLSAMSYGLFTVLLKKFAGEEGERVDVQKLFGYIGLFTLVALWWLVWPLTALGIEPKF
TIPHSAKLDEIVLANGFVGSVLSDYFWALCVVWTTPLVATLGMSLTIPLAMLADMVIHGRHYSAIYILGSVQVFVGFVIANLSNWFSKKLGL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G32140 EamA-like transporter family (... Potri.018G024700
[exp]
0 1
AT3G51850 CPK13 calcium-dependent protein kina... Potri.006G101300
[exp]
3.74 0.9068
AT2G01275 RING/FYVE/PHD zinc finger supe... Potri.004G093500
[exp]
5.00 0.9215
AT1G80950 Phospholipid/glycerol acyltran... Potri.014G042200
[exp]
7.41 0.8828
AT1G27850 unknown protein Potri.010G056200
[exp]
9.79 0.8997
AT5G64030 S-adenosyl-L-methionine-depend... Potri.007G104000
[exp]
10.58 0.8773
AT1G53035 unknown protein Potri.001G399900
[exp]
10.72 0.8921
AT5G16490 RIC4 ROP-interactive CRIB motif-con... Potri.014G147000
[exp]
12.32 0.8930 Pt-RIC2.1
AT5G13500 unknown protein Potri.001G028100
[exp]
15.16 0.8874
AT2G36670 Eukaryotic aspartyl protease f... Potri.006G118800
[exp]
15.29 0.8556
AT1G15690 FUGU5, AtVHP1;1... FUGU 5, ARABIDOPSIS THALIANA V... Potri.018G119500
[exp]
16.52 0.8918

Potri.018G024700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.