Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G34850 742 / 0 ATPAP26, PAP26 purple acid phosphatase 26 (.1) AT2G27190 545 / 0 ATPAP12 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) AT2G16430 535 / 0 ATPAP10, PAP10 purple acid phosphatase 10 (.1.2) AT1G56360 524 / 0 PAP6, ATPAP6 purple acid phosphatase 6 (.1) AT4G36350 520 / 0 ATPAP25, PAP25 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 25, purple acid phosphatase 25 (.1) AT2G18130 450 / 5e-156 PAP11, ATPAP11 purple acid phosphatase 11 (.1) AT1G52940 443 / 6e-154 PAP5, ATPAP5 purple acid phosphatase 5 (.1) AT3G46120 365 / 2e-123 ATPAP19, PAP19 purple acid phosphatase 19 (.1) AT3G20500 308 / 2e-100 ATPAP18, PAP18 purple acid phosphatase 18 (.1) AT3G52810 297 / 3e-96 ATPAP21, PAP21 purple acid phosphatase 21 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G063700 [exp] 781 / 0 AT5G34850 798 / 0.0 purple acid phosphatase 26 (.1) Potri.018G123700 [exp] 742 / 0 AT5G34850 762 / 0.0 purple acid phosphatase 26 (.1) Potri.005G233400 [exp] 556 / 0 AT2G16430 700 / 0.0 purple acid phosphatase 10 (.1.2) Potri.009G121200 [exp] 551 / 0 AT2G16430 773 / 0.0 purple acid phosphatase 10 (.1.2) Potri.004G160100 [exp] 548 / 0 AT2G16430 779 / 0.0 purple acid phosphatase 10 (.1.2) Potri.002G029300 [exp] 548 / 0 AT2G16430 693 / 0.0 purple acid phosphatase 10 (.1.2) Potri.011G138200 [exp] 295 / 3e-95 AT3G20500 696 / 0.0 purple acid phosphatase 18 (.1) Potri.001G423700 [exp] 288 / 1e-92 AT3G20500 701 / 0.0 purple acid phosphatase 18 (.1) Potri.003G030700 [exp] 267 / 3e-84 AT3G52820 607 / 0.0 purple acid phosphatase 22 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027710 [exp] 769 / 0 AT5G34850 790 / 0.0 purple acid phosphatase 26 (.1) Lus10039978 [exp] 763 / 0 AT5G34850 784 / 0.0 purple acid phosphatase 26 (.1) Lus10008054 [exp] 756 / 0 AT5G34850 774 / 0.0 purple acid phosphatase 26 (.1) Lus10028799 [exp] 545 / 0 AT2G16430 746 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017484 [exp] 544 / 0 AT2G16430 748 / 0.0 purple acid phosphatase 10 (.1.2) Lus10006126 [exp] 527 / 0 AT2G27190 681 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1) Lus10041959 [exp] 523 / 0 AT2G16430 731 / 0.0 purple acid phosphatase 10 (.1.2) Lus10017485 [exp] 512 / 6e-180 AT2G16430 671 / 0.0 purple acid phosphatase 10 (.1.2) Lus10028798 [exp] 510 / 4e-179 AT2G16430 673 / 0.0 purple acid phosphatase 10 (.1.2) Lus10024299 [exp] 466 / 1e-162 AT2G27190 612 / 0.0 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 1, purple acid phosphatase 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase CL0159 [poplar] [flax] E-set PF16656 [poplar] [flax] Pur_ac_phosph_N Purple acid Phosphatase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.018G024800.2 pacid=42801378 polypeptide=Potri.018G024800.2.p locus=Potri.018G024800 ID=Potri.018G024800.2.v4.1 annot-version=v4.1 ATGCTGCTGGCTTCTAGGTTATTGCGGTTGCAATTGTTTCGATTTGTAATTATATTAGTTTTAGTCTTGAGCTATGTGGAAAATGGGAATGCGGGTTTAA CGAGCACTTTTGTTCGTACTCAATGGCCAGCGGCAGATATCCCTCTTGACAATGAAGTTTTTGCAATTCCAAAAGGTTATAATGCTCCACAGCAAGTCCA CATCACTCAAGGTGATTATGATGGGAAGGCTGTAATAATCTCTTGGGTTACGCCTGATGAACCGGGTTCAAATTCTGTGAAATATGGCACTTCAGAGAAT AGTTATGATTTTAGTGCTGAGGGCACTGTTACTAACTACACCTTTTACAAATATAAGTCTGGCTACATCCATCACTGTCTTGTTGATGGGCTTGAGTATG ATTCCAAGTATTACTACAAGATCGGAGAAGGTGACTCCTCTCGTGTGTTTTGGTTTCAAACACCTCCAGAGATTGATCCAGATGCTTCCTACACATTTGG AATTATTGGTGATTTGGGTCAAACATATAATTCTCTTTCCACTCTCGAGCATTACATGAAGAGTGGGGGACAGAGTGTTTTGTTTGCTGGTGATCTCTCT TATGCTGATAGATATCAATATGATGATGTTGGTATTAGATGGGATTCATGGGGCCGTTTTGTCGAGCAAAGTGCTGCATATCAACCATGGATTTGGTCAG CTGGGAATCACGAGATAGAGTACATGCCAGAAATGGAGGAAGTCCTTCCATTTAAATCATTTCTGCATAGATTTGCCACCCCTCATACAGCCTCAAAAAG CACCAATCCTCTTTGGTATGCTATACGCCGTGCATCTGCTCACATCATTGTCCTCTCCAGCTATTCTCCATTTGTAAAATACACTCCTCAATGGATGTGG CTTAGAGAAGAATTGAAAAGAGTCAACAGGGAGAAGACACCTTGGCTCATTGTTGTTATGCACGTGCCCATCTACAACAGCAATGCAGCCCACTATATGG AAGGTGAAAGCATGCGTGCAGTCTTTGAAAGCTGGTTTGTTAGATCCAAAGTCGACTTCATTTTTGCTGGTCATGTTCATGCATATGAAAGATCATATCG TATCTCAAACATACATTATAACGTGACAACTGGTGACCGTTATCCTGTTCCTGACAAATCAGCGCCTGTGTACCTAACTGTTGGGGATGGGGGAAATCAG GAAGGTCTTGTTGGAAGGTTCGTCGACCCACAACCAGATTATTCCGCATTCAGAGAAGCTAGTTATGGCCATTCTACCTTGGAGATTAGGAACAGAACAC ATGCATTCTACCAATGGAACCGAAATGATGACGGAAAGCCAGAAACAACTGATTCTGTGATATTCCATAACCAATACTGGGCAAGCAATATGCATAGAAG GAGACATCTCAAGGCTAGGGAACATGCTAGTTGCTGA
AA sequence Show only first row Show all	>Potri.018G024800.2 pacid=42801378 polypeptide=Potri.018G024800.2.p locus=Potri.018G024800 ID=Potri.018G024800.2.v4.1 annot-version=v4.1 MLLASRLLRLQLFRFVIILVLVLSYVENGNAGLTSTFVRTQWPAADIPLDNEVFAIPKGYNAPQQVHITQGDYDGKAVIISWVTPDEPGSNSVKYGTSEN SYDFSAEGTVTNYTFYKYKSGYIHHCLVDGLEYDSKYYYKIGEGDSSRVFWFQTPPEIDPDASYTFGIIGDLGQTYNSLSTLEHYMKSGGQSVLFAGDLS YADRYQYDDVGIRWDSWGRFVEQSAAYQPWIWSAGNHEIEYMPEMEEVLPFKSFLHRFATPHTASKSTNPLWYAIRRASAHIIVLSSYSPFVKYTPQWMW LREELKRVNREKTPWLIVVMHVPIYNSNAAHYMEGESMRAVFESWFVRSKVDFIFAGHVHAYERSYRISNIHYNVTTGDRYPVPDKSAPVYLTVGDGGNQ EGLVGRFVDPQPDYSAFREASYGHSTLEIRNRTHAFYQWNRNDDGKPETTDSVIFHNQYWASNMHRRRHLKAREHASC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G34850		ATPAP26, PAP26	purple acid phosphatase 26 (.1...		Potri.018G024800 [exp]	0	1
AT5G15630		IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4...		Potri.015G060100 [exp]	5.91	0.8933
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.010G187600 [exp]	11.09	0.8665
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Potri.006G097000 [exp]	13.41	0.8345	Pt-LAC2.2
AT2G28410			unknown protein		Potri.004G211000 [exp]	14.07	0.8350
AT5G63400		ADK1	adenylate kinase 1 (.1.2)		Potri.015G092800 [exp]	19.89	0.8308
AT3G55990		TBL29, ESK1	TRICHOME BIREFRINGENCE-LIKE 29...		Potri.008G069900 [exp]	23.19	0.8666
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.010G229600 [exp]	27.11	0.8403	RAB1.1
AT2G20650			RING/U-box superfamily protein...		Potri.017G012600 [exp]	27.47	0.8406
AT4G38660			Pathogenesis-related thaumatin...		Potri.002G020400 [exp]	27.56	0.8416
AT1G53710			Calcineurin-like metallo-phosp...		Potri.001G161100 [exp]	29.66	0.7792

Compare expression of checked genes

Potri.018G024800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.