Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11100 824 / 0 SYT4, NTMCTYPE2.2, ATSYTD ,NTMC2T2.2 ,NTMC2TYPE2.2 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G05500 793 / 0 SYT5, NTMCTYPE2.1, ATSYTE ,NTMC2T2.1 ,NTMC2TYPE2.1 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G61050 273 / 1e-84 AtCLB, NTMCTYPE4 ,NTMC2T4 ,NTMC2TYPE4 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G20080 231 / 1e-68 SYT2, NTMCTYPE1.2, ATSYTB ,NTMC2T1.2 ,NTMC2TYPE1.2 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT5G04220 220 / 2e-64 SYT3, NTMCTYPE1.3, ATSYTC ,NTMC2T1.3 ,NTMC2TYPE1.3 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT2G20990 219 / 5e-64 SYT1, NTMC2TYPE1.1, ATSYTA ,NTMC2T1.1 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) AT3G61030 152 / 7e-40 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 152 / 2e-39 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1) AT2G21010 88 / 3e-19 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G03370 74 / 2e-13 C2 calcium/lipid-binding and GRAM domain containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G124000 [exp] 809 / 0 AT1G05500 877 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.006G063900 [exp] 796 / 0 AT1G05500 847 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.014G072800 [exp] 256 / 1e-78 AT3G61050 657 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.002G150700 [exp] 254 / 1e-77 AT3G61050 624 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G038300 [exp] 238 / 5e-71 AT5G04220 629 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.010G223900 [exp] 229 / 6e-68 AT5G04220 598 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.009G134200 [exp] 225 / 2e-66 AT2G20990 850 / 0.0 SYNAPTOTAGMIN 1, ARABIDOPSIS THALIANA SYNAPTOTAGMIN A, synaptotagmin A (.1.2.3) Potri.005G241700 [exp] 221 / 4e-65 AT1G20080 816 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.002G019800 [exp] 218 / 9e-64 AT1G20080 846 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006193 [exp] 891 / 0 AT5G11100 862 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10038117 [exp] 784 / 0 AT1G05500 888 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041034 [exp] 728 / 0 AT5G11100 710 / 0.0 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10008055 [exp] 679 / 0 AT1G05500 775 / 0.0 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10039979 [exp] 335 / 5e-110 AT5G11100 379 / 2e-127 synaptotagmin 4, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10041396 [exp] 250 / 2e-76 AT3G61050 676 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10036532 [exp] 249 / 2e-75 AT3G61050 672 / 0.0 calcium-dependent lipid-binding protein, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10027709 [exp] 230 / 4e-71 AT1G05500 264 / 1e-84 synaptotagmin 5, ARABIDOPSIS THALIANA SYNAPTOTAGMIN HOMOLOG E, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10037993 [exp] 217 / 2e-63 AT5G04220 701 / 0.0 synaptotagmin 3, Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10013563 [exp] 214 / 3e-62 AT1G20080 852 / 0.0 synaptotagmin 2, Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0648 [poplar] [flax] Aha1_BPI PF17047 [poplar] [flax] SMP_LBD Synaptotagmin-like mitochondrial-lipid-binding domain
Representative CDS sequence Show only first row Show all	>Potri.018G025000.3 pacid=42800588 polypeptide=Potri.018G025000.3.p locus=Potri.018G025000 ID=Potri.018G025000.3.v4.1 annot-version=v4.1 ATGTCTTTCTTTATTGGTATGATTATAGGAATCTCTGTTGGGATTGGTCTCATCGTAGCATTTGCTAAGTACGAGAATATCAGATCCATGCGTCGTTCTC AATTGGCTAAGACAGTGGCAGCATTTGCAAGAATGACAGTCCAGGATTCAAGAAAAATTCTTCCTGATGAGTTTTATCCACCCTGGGTTGTCTTTTCACA GAGGCAGAAGTTAACTTGGCTTAATGCTCAACTTGACAAGATTTGGCCTTATGTTGACGAGGCAGCATCAGACCTGATAAGAAGCAATGTTGAACCAATT CTTGAACAATATACGCCAGCTATATTTTCATCTATGAAGTTTTCCAAGTTGACCCTTGGTACTGTGGCTCCACAATTTACAGGAGTTTGCATTATTGAAG AGGAAAGTGGAGACAAGGGTATCACCATGGAATTGGAGATGCAGTGGGATGGCAATCCAAATATTGTACTTGATATCAATACAAGAGTTGGTGTGGCACT ACCCATCCAGGTGAAAAATATTGGATTCACTGGGGTTTTCAGGTTAATCTTCAAGCCACTAGCCGAAGACTTTCCTGGTTTTGGAGCTGTTTCTTATTCC TTGAGAGAAAAGAAAAAGCTGGATTTTACGCTTAAAGTTGTTGGTGGTCAGATATCAGCAATCCCAGGCCTTTCTGATGCTATTGAGGAAACCATAAAGG ATGCTATTGAAGATTCTATAACATGGCCAGTTCGGAAAATTGTATCAATATTACCTGGGGATTATAGTGACCTGGAGTTGAAGCCCGTTGGTACTTTAGA CGTGAAGCTTGTGCAGGGCAAGGACTTGACAAATAAAGACATTGTCGGAAAATCTGATCCTTTTGCTGTCTTATTTATACGTCCACTACGTAGCAGGATG AAAACCAGCAAAACAATTAGCAACCAATTGAATCCCATATGGAATGAACACTTTGAGTTCGTAGTTGAAGATGCATCAACTCAACACTTGACTGTAAGAG TCTTCGATGATGAAGGAGTTCAGGCTGCTGAACTCATTGGTTGTGCTCTAGTGGCACTAAAGGATCTTGAGCCTGGTAAAGTGAAGGATGTATGGTTGAA ACTAGTCAAAGATTTAGAGATCCAGAGAGATAACAAGAACAGGGGTCAGGTGCACTTGGAGCTTTTGTACTGTCCGTATGGCACAGAGAGCAGTTTCAAA AATCCTTTTAACCCTGATTTTCAAATGACCACTTTAGAAAAGGCCATTAGGAGTGGCACTGATGGAACAGGTGATCCTAATTCTGGAAGAACATCTCCAA AGAAAAATGTCATCGTGAGAGGAGTACTATCAGTTACTGTTATAGCTGCAGAAAACTTGCCGGCAACTGACTTGAATGGAAAGGCCGACCCCTATGTTGT CCTTATAATGAAGAAATCTGAGAAAAAAGCCAAGACTAGAGTCCTAACTAAGAACCTAAATCCAGTTTGGAATCAAACATTTGAATTTGTTGTGGAGGAT GCAATACACGATATGTTAATTGCAGAAGTCTGGGACCATGACACTTTTGGCAAGGATAAAATGGGAAGATGCATAATGACACTCACCAGGGTTCTATTAG AAGGAGAATTTCAAGACAGCTTTCCACTAGACGGTGCTAAATCAGGAAAGCTGCTTCTGCATCTCCAGTGGACACCGCAGCTAAAGTTTCGTGATTCTTG A
AA sequence Show only first row Show all	>Potri.018G025000.3 pacid=42800588 polypeptide=Potri.018G025000.3.p locus=Potri.018G025000 ID=Potri.018G025000.3.v4.1 annot-version=v4.1 MSFFIGMIIGISVGIGLIVAFAKYENIRSMRRSQLAKTVAAFARMTVQDSRKILPDEFYPPWVVFSQRQKLTWLNAQLDKIWPYVDEAASDLIRSNVEPI LEQYTPAIFSSMKFSKLTLGTVAPQFTGVCIIEEESGDKGITMELEMQWDGNPNIVLDINTRVGVALPIQVKNIGFTGVFRLIFKPLAEDFPGFGAVSYS LREKKKLDFTLKVVGGQISAIPGLSDAIEETIKDAIEDSITWPVRKIVSILPGDYSDLELKPVGTLDVKLVQGKDLTNKDIVGKSDPFAVLFIRPLRSRM KTSKTISNQLNPIWNEHFEFVVEDASTQHLTVRVFDDEGVQAAELIGCALVALKDLEPGKVKDVWLKLVKDLEIQRDNKNRGQVHLELLYCPYGTESSFK NPFNPDFQMTTLEKAIRSGTDGTGDPNSGRTSPKKNVIVRGVLSVTVIAAENLPATDLNGKADPYVVLIMKKSEKKAKTRVLTKNLNPVWNQTFEFVVED AIHDMLIAEVWDHDTFGKDKMGRCIMTLTRVLLEGEFQDSFPLDGAKSGKLLLHLQWTPQLKFRDS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11100		SYT4, NTMCTYPE2...	synaptotagmin 4, Calcium-depen...		Potri.018G025000 [exp]	0	1
AT4G35230		BSK1	BR-signaling kinase 1 (.1)		Potri.002G011800 [exp]	4.35	0.9169
AT5G55950			Nucleotide/sugar transporter f...		Potri.001G370800 [exp]	5.47	0.9021
AT1G33230			TMPIT-like protein (.1)		Potri.011G147500 [exp]	8.12	0.8938
AT3G12740		ALIS1	ALA-interacting subunit 1 (.1)		Potri.017G139300 [exp]	14.14	0.8957
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.008G012400 [exp]	14.28	0.9007
AT1G77280			Protein kinase protein with ad...		Potri.005G182800 [exp]	16.43	0.8898
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.002G036400 [exp]	17.23	0.9021
AT5G62700		atgcp3, TUB3	tubulin beta chain 3 (.1)		Potri.001G272800 [exp]	24.97	0.8903
AT1G33490			unknown protein		Potri.013G095200 [exp]	25.74	0.8875
AT5G54240			Protein of unknown function (D...		Potri.011G126300 [exp]	26.72	0.8929

Compare expression of checked genes

Potri.018G025000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.