Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	SPS.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G20280 1464 / 0 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) AT5G11110 1461 / 0 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT1G04920 1153 / 0 ATSPS3F sucrose phosphate synthase 3F (.1) AT4G10120 1029 / 0 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G49190 149 / 1e-36 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT1G73370 149 / 2e-36 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT4G02280 134 / 9e-32 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G20830 128 / 6e-30 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT3G43190 127 / 2e-29 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT5G37180 126 / 2e-29 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G064300 [exp] 1587 / 0 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.018G124677 [exp] 1559 / 0 AT5G20280 1601 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.T124307 [exp] 1329 / 0 AT5G20280 1389 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.001G317600 [exp] 1174 / 0 AT1G04920 1644 / 0.0 sucrose phosphate synthase 3F (.1) Potri.017G057800 [exp] 1173 / 0 AT1G04920 1610 / 0.0 sucrose phosphate synthase 3F (.1) Potri.013G095500 [exp] 1091 / 0 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.012G037200 [exp] 136 / 2e-32 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 135 / 4e-32 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.002G202300 [exp] 131 / 6e-31 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038119 [exp] 1571 / 0 AT5G20280 1647 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Lus10008056 [exp] 1291 / 0 AT5G11110 1384 / 0.0 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) Lus10016657 [exp] 1159 / 0 AT1G04920 1670 / 0.0 sucrose phosphate synthase 3F (.1) Lus10041041 [exp] 971 / 0 AT4G10120 1412 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Lus10022570 [exp] 478 / 4e-158 AT1G04920 717 / 0.0 sucrose phosphate synthase 3F (.1) Lus10006186 [exp] 225 / 9e-67 AT4G10120 303 / 8e-96 Sucrose-phosphate synthase family protein (.1.2) Lus10006185 [exp] 157 / 2e-43 AT4G10120 189 / 2e-55 Sucrose-phosphate synthase family protein (.1.2) Lus10006184 [exp] 155 / 2e-43 AT4G10120 208 / 4e-63 Sucrose-phosphate synthase family protein (.1.2) Lus10001468 [exp] 138 / 6e-33 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 135 / 5e-32 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00534 [poplar] [flax] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [poplar] [flax] GT-B PF00862 [poplar] [flax] Sucrose_synth Sucrose synthase CL0137 [poplar] [flax] HAD PF05116 [poplar] [flax] S6PP Sucrose-6F-phosphate phosphohydrolase
Representative CDS sequence Show only first row Show all	>Potri.018G025100.1 pacid=42801153 polypeptide=Potri.018G025100.1.p locus=Potri.018G025100 ID=Potri.018G025100.1.v4.1 annot-version=v4.1 ATGGCGGGAAATGACTGGATAAATAGTTACTTAGAAGCGATACTGGACGTTGATCCAGGAATCGTCGATGCAAAATCGTCTTTGTTGCTTAGGGAGCGAG GTCGTTTTAGTCCTACTCGGTATTTTGTTGAGGAAGTTATTACTGGCTTCGATGAGACTGATCTCCATCGTTCCTGGCTTCGTGCTGCGGCGATGAGGAG TACGCAAGAGAGAAATACTAGATTGGAAAATATGTGCTGGAGGATTTGGAATTTGGCTCGCAAGAAGAAACAGCTTGAGGGCGAGGAAGCTCAAAGGATA GCGAAACGCCACCTTGAACGTGAAAGAGGTCGCAAAGAGGCAACTGCTGATATGTCGGAAGATCTGTCAGAAGGAGAGAAAGGAGATGTCCCTGGTGACC TTTCAGCACATGGTGGGAGTGTTAGAGGAAGAATGCCTAGAATAAGTTCTGTTGATGTGATGGAGAATTGGGCTAACCAGCACAAAGAAAAGAAACTTTA CATTGTGCTCATAAGTCTTCATGGCTTGATACGCGGTGAAAACATGGAGCTTGGTCGTGATTCAGATACAGGTGGCCAGGTCAAGTATGTAGTAGAGCTT GCGAGGGCCCTGGGGACAATGCCAGGGGTTTATCGGGTTGATTTGCTGACAAGACAAGTATCGGCTCCAGATGTGGATTGGAGTTATGGTGAGCCAACAG AGATGCTGAATCTAATAAGCTCTGAGAATTCAACAGGGGAGCTCGGTGAGAGTAGCGGTGCTTACATTATTCGAATACCATTTGGCCCGAAGGACAAGTA CATAAGAAAGGAACTCCTTTGGCCTTACATTCCAGAATTTGTAGATGGTGCACTAGGTCATATTATGCAGATGTCTAATGTTTTGGGAGAGCAAATTGGT GGTGGAAATCCAGTCTGGCCTGTTGCAATTCATGGACATTATGCTGATGCTGGTGACTCTGCTGCTCTTCTCTCTGGAGCTCTAAATGTTCCTATGGTTT TTACTGGACACTCACTTGGACGAGACAAGCTTGAACAACTTATGAAACAGGGACGGCAGTCGAGGGAAGAAGTAAATGCAACGTACAAAATAATGCGGCG GATAGAGGCTGAAGAGTTAACTCTTGATGCCTCGGAGATTATTATAACTAGCACTAAACAGGAGATAGAAGAGCAATGGCGCCTGTATGATGGCTTTGAT CCAGTACTAGAGCGCAAACTTAGAGCAAGGGTCAAACGAGGAGTGAGCTGTCATGGCAGGTTCATGCCTCGAACTGTTGTGATTCCTCCTGGAATGGAGT TTCATCATATCACTCCACACGATGGAGATTCTGATGGAGAAGAAGAAAAAAACAAAGATCATCCTGCGTCTCCTGATCCACCAATTTGGTCAGAGATAAT GCGTTTCTTTTCCAATCCCCGGAAGCCTATGATACTAGCTCTTGCAAGGCCAGACCCAAAAAAGAATATTACTACTTTAGTCAAAGCATTTGGAGAATGC CGCCCGCTAAGGGAGCTTGCCAACCTAACATTAATAATGGGAAACCGTGATGATATTGATGAAATGTCAGGCGCAAATGCCTCTTATCTTCTTTCCGTTA TCAAGCTTGTTGATAAATATGATCTATATGGTCAAGTGGCTTACCCTAAACACCATAAGCAATCTGATGTTCCTGACATTTACCGTCTTGCAGCCAAAAC AAAGGGTGTGTTCATTAATCCAGCTTTCATTGAGCCATTTGGACTTACTTTGATAGAGGCAGCAGCTTATGGTTTGCCTATTGTTGCCACAAAAAATGGT GGTCCTGTGGACATTCATCGGGTGCTTGACAATGGACTGCTAGTTGATCCTCACGACCAACAGTCCATTGCTGATGCTCTTCTCAAGCTTGTTTCCGATA AGCAGCTGTGGGCAAGATGTAGACAGAACGGACTGAAAAATATCCACCTTTTCTCATGGCCAGAGCATTGTAAAGCATACCTAGCTCGGATAGTCAGTTG CAAACCCAGGCAGCCTCAGTGGCAGAAAATTGAAGAAGGATTTCAAAATTCAGAATCAGATTCACCTGGCGATTCTTTGAGAGACATACAGGATTTATCT TTAAACTTGAAGCTATCATTGGACGGGGAAAAAAATGGAAGTGGCAATCTTGATAATTCTTTAGATAATGAGGACAATGCTGTTGATGGAAAGTACAAGT TAGAAAACGCTGTTTTGACAGTATCAAAAGGTGCCGGAGGAGGCTTGCAGAAGGATGGAGCTAAAGAGAGAGCAGATAACAATACTAGCAGTAGTAAATT TCCATCTCTGAGGAGGAGGAAGCACATTTTTGTCATTGCTGTTGATTGCGATACGACTTCAGATTTTCTTGAAATCCTCAAGATGGTTGTTGAAGTGGCA AATGAAAATTCTGCTGGGTTGATAGGATTCATTTTATCAACAGCCATGACCATATCTGAGATAAATTCTCTTCTGAATTCAGGGGGCTTGAACCCATTGG ATTTTGATGCATTTATTTGTAACAGTGGTAGCAATCTCTATTATCCATCTTCAAGCTCTGATGATTCTGGACTTCCATTTGTACTGGACTTGGACTATCA TTCACAGATTGAATACCGTTGGGGCGGAGAAGGTTTGAGGAAGACTTTGGTTCGTTGGGCTATTTCTGTTAATGATAAAAATGGACAAGGAAAGATTGTT GAGGAAGATGAACCCAGGTCGTCTTCATATTGCTTTGCATTGAAAGTGAAAGACTTATCATTGATCCCCCCTGTTAAGGAACTTCGGAAATTGATGAGAA TTCAGGCTCTTCGATGCCATGTAATTTATTGTCAACAAGGTGCCAAAATAAATGTGATCCCTGTGCTGGCTTCTAGATCCCAGGCGCTGAGGTACCTATA TGTTCGATGGGCCACGGACTTGTCAAATATTGTGATCTTCACAGGAGAATGTGGAGACACGGATTATGAAGGGTTACTTGGTGGGCTCCATAAGACTGTT GTGCTGAAGGGAGTTGGCAGCAGTTCTCTCAAGCTCCATGCTAATAGAAGCTATCCTCTGGAAGATGTTGCGCCGTTTGACAATCCCAACTTTGTCCAAG CCGGGGGATGCAACGCCGAGGATATAAAGGAATCTTTGGAGAAACTAGGGATTCTTAAGGGTTAG
AA sequence Show only first row Show all	>Potri.018G025100.1 pacid=42801153 polypeptide=Potri.018G025100.1.p locus=Potri.018G025100 ID=Potri.018G025100.1.v4.1 annot-version=v4.1 MAGNDWINSYLEAILDVDPGIVDAKSSLLLRERGRFSPTRYFVEEVITGFDETDLHRSWLRAAAMRSTQERNTRLENMCWRIWNLARKKKQLEGEEAQRI AKRHLERERGRKEATADMSEDLSEGEKGDVPGDLSAHGGSVRGRMPRISSVDVMENWANQHKEKKLYIVLISLHGLIRGENMELGRDSDTGGQVKYVVEL ARALGTMPGVYRVDLLTRQVSAPDVDWSYGEPTEMLNLISSENSTGELGESSGAYIIRIPFGPKDKYIRKELLWPYIPEFVDGALGHIMQMSNVLGEQIG GGNPVWPVAIHGHYADAGDSAALLSGALNVPMVFTGHSLGRDKLEQLMKQGRQSREEVNATYKIMRRIEAEELTLDASEIIITSTKQEIEEQWRLYDGFD PVLERKLRARVKRGVSCHGRFMPRTVVIPPGMEFHHITPHDGDSDGEEEKNKDHPASPDPPIWSEIMRFFSNPRKPMILALARPDPKKNITTLVKAFGEC RPLRELANLTLIMGNRDDIDEMSGANASYLLSVIKLVDKYDLYGQVAYPKHHKQSDVPDIYRLAAKTKGVFINPAFIEPFGLTLIEAAAYGLPIVATKNG GPVDIHRVLDNGLLVDPHDQQSIADALLKLVSDKQLWARCRQNGLKNIHLFSWPEHCKAYLARIVSCKPRQPQWQKIEEGFQNSESDSPGDSLRDIQDLS LNLKLSLDGEKNGSGNLDNSLDNEDNAVDGKYKLENAVLTVSKGAGGGLQKDGAKERADNNTSSSKFPSLRRRKHIFVIAVDCDTTSDFLEILKMVVEVA NENSAGLIGFILSTAMTISEINSLLNSGGLNPLDFDAFICNSGSNLYYPSSSSDDSGLPFVLDLDYHSQIEYRWGGEGLRKTLVRWAISVNDKNGQGKIV EEDEPRSSSYCFALKVKDLSLIPPVKELRKLMRIQALRCHVIYCQQGAKINVIPVLASRSQALRYLYVRWATDLSNIVIFTGECGDTDYEGLLGGLHKTV VLKGVGSSSLKLHANRSYPLEDVAPFDNPNFVQAGGCNAEDIKESLEKLGILKG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G20280		SPSA1, ATSPS1F	sucrose-phosphate synthase A1,...		Potri.018G025100 [exp]	0	1	SPS.2
AT3G51750			unknown protein		Potri.016G124000 [exp]	10.48	0.6635
AT5G62040		BFT	brother of FT and TFL1, PEBP (...		Potri.015G141300 [exp]	13.15	0.6690	Pt-PNFTL1.1
AT5G19530		ACL5	ACAULIS 5, S-adenosyl-L-methio...		Potri.006G222200 [exp]	16.97	0.5605
AT2G37870			Bifunctional inhibitor/lipid-t...		Potri.008G141000 [exp]	20.37	0.6031
					Potri.018G100166 [exp]	23.17	0.6122
AT5G47920			unknown protein		Potri.014G140000 [exp]	27.45	0.5535
AT2G33620	AT-hook		AT hook motif DNA-binding fami...		Potri.002G005000 [exp]	27.87	0.5595
AT1G07430		HAI2	highly ABA-induced PP2C gene 2...		Potri.001G092100 [exp]	29.73	0.6098
AT5G20250		RS6, DIN10	raffinose synthase 6, DARK IND...		Potri.018G126400 [exp]	33.86	0.5380
AT3G05980			unknown protein		Potri.010G090700 [exp]	39.42	0.6028

Compare expression of checked genes

Potri.018G025100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.