Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11130 530 / 0 Exostosin family protein (.1) AT5G20260 504 / 3e-177 Exostosin family protein (.1) AT5G33290 471 / 9e-164 XGD1 xylogalacturonan deficient 1 (.1) AT3G42180 458 / 7e-159 Exostosin family protein (.1.3) AT5G03795 392 / 2e-132 Exostosin family protein (.1) AT5G25310 382 / 9e-129 Exostosin family protein (.1) AT3G07620 374 / 4e-126 Exostosin family protein (.1) AT4G16745 301 / 2e-96 Exostosin family protein (.1.2) AT5G19670 280 / 1e-87 Exostosin family protein (.1) AT4G32790 275 / 4e-86 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.T124607 [exp] 522 / 0 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124945 [exp] 520 / 0 AT5G20260 548 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 517 / 0 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.018G124832 [exp] 517 / 0 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.006G064600 [exp] 514 / 0 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.006G064700 [exp] 510 / 5e-179 AT5G20260 563 / 0.0 Exostosin family protein (.1) Potri.T124707 [exp] 506 / 4e-177 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.018G125058 [exp] 506 / 4e-177 AT5G20260 526 / 0.0 Exostosin family protein (.1) Potri.006G064800 [exp] 498 / 7e-174 AT5G20260 556 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027707 [exp] 488 / 1e-170 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10005186 [exp] 483 / 2e-168 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10039980 [exp] 464 / 8e-160 AT5G20260 489 / 2e-169 Exostosin family protein (.1) Lus10039142 [exp] 401 / 3e-135 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 393 / 5e-132 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 387 / 8e-131 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10001917 [exp] 382 / 2e-128 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10008751 [exp] 381 / 1e-127 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10016058 [exp] 360 / 2e-122 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10001958 [exp] 293 / 2e-96 AT5G25310 372 / 1e-127 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.018G025200.2 pacid=42800979 polypeptide=Potri.018G025200.2.p locus=Potri.018G025200 ID=Potri.018G025200.2.v4.1 annot-version=v4.1 ATGGCTGATCTCGTTTATTCCACCCCTTGCATACTATGCCCTTTAATCCTTCTCGTTCTCCTTTGCTATTCATTCAACAGTTTCTCCACCAAAACTTCTG CTTCTCTATCGAATAATCTCTCAAATACTTCAGAAATGATTTCCCCTATTCCTAGTGTAGTTAAAGATGATCACTTCTACAATACAACTAATTGTAGCAA CAGCGTGCAAAAGGAGCTGCACAAGAAGAGCCGGATTGAAACAATGGAAGAAGGGCTGGCAAGAGCAAGAGCAGCAATAAGAAAGGCGACTCGAATGCGT AATTACACATCTTATAAGAAAGAGAGCTTTGTCCCTAGAGGATCCATCTACATAAACCCTTACGCCTTTCATCAGAGCCACATTGAGATGGAGAAGAGAT TTAGAGTATGGACATACAGGGAAGGAGAGCAACCACTTTTTCACAGAGGCCCGATGAATGATATTTACTCCATCGAGGGGCAAATCATTGACGAACTGGA CAGTGGCAAGAGCCCATTTTCAGCTAAAAATCCTGACGAGGCACTTGCATTTTTCATCCCAGTTAGCATCGCCAGTATCCTTCATTTCATCTATAGACCT TATGTCACCTACTCTCGTAAGCAAATCCAGGACATTGCTGAGGACTACATTGGCCTCATTTCCAGCAAGTATCCGTACTGGAATAGAAGCAGTGGAGCTG ACCATTTTATGATTTCCTGTCACGATTGGGCACCAGATGTTTCGGCTGCCAACCCTGATCTGTACAGGAACTTCATTAGAGTTCTATGCAATGCCAATTC CTCCGAAGGGTTCAAACCGGCGAGGGATGTCTCCTTGCCTGAATTTAAGCTCCCGCGTGGAAAGTTAGAACCAGAACACATCCTCCAGCCTTGTGATAAC AATCGTTCGATCCTTGCCTTCTTTGCCGGGGGTAGCCATGGGAGTGTAAGAAAGATATTATTCAAACATTGGAAAGAAAAGGACAATGACATTCAAGTTT ACAAATACCTCCCTGAAACCCTAAATTACACCGAGCAAATGAGTAAGAGCAGGTATTGCCTGTGCCCTAGTGGATGGGAAGTTGCAAGCCCTAGGGTAGT CGAGGCAATCTATTCAGGCTGTGTTCCAGTGATCATTTCAGACTATTATGTTCTACCTTTTAGTGATGTTCTTGACTGGATCAAGTTTTCTGTTCATATC CCGGTTTCAGGGATCCCAGAAATCAAGACAATTTTACAAAGCATTCCTGTGGAGGAGTATTTGGAGAAGCAAAAGAGGGTTCTTCAAGTGCAGCAACATT TCAAGCTCCATCGACCAGCTAAGCCCTTCGATGTGGTGCATATGGTGATGCATTCTGTGTGGCTCCGGAGGCTTAATATCAGGCTGCCAAGATAA
AA sequence Show only first row Show all	>Potri.018G025200.2 pacid=42800979 polypeptide=Potri.018G025200.2.p locus=Potri.018G025200 ID=Potri.018G025200.2.v4.1 annot-version=v4.1 MADLVYSTPCILCPLILLVLLCYSFNSFSTKTSASLSNNLSNTSEMISPIPSVVKDDHFYNTTNCSNSVQKELHKKSRIETMEEGLARARAAIRKATRMR NYTSYKKESFVPRGSIYINPYAFHQSHIEMEKRFRVWTYREGEQPLFHRGPMNDIYSIEGQIIDELDSGKSPFSAKNPDEALAFFIPVSIASILHFIYRP YVTYSRKQIQDIAEDYIGLISSKYPYWNRSSGADHFMISCHDWAPDVSAANPDLYRNFIRVLCNANSSEGFKPARDVSLPEFKLPRGKLEPEHILQPCDN NRSILAFFAGGSHGSVRKILFKHWKEKDNDIQVYKYLPETLNYTEQMSKSRYCLCPSGWEVASPRVVEAIYSGCVPVIISDYYVLPFSDVLDWIKFSVHI PVSGIPEIKTILQSIPVEEYLEKQKRVLQVQQHFKLHRPAKPFDVVHMVMHSVWLRRLNIRLPR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G11130			Exostosin family protein (.1)		Potri.018G025200 [exp]	0	1
AT1G29670			GDSL-like Lipase/Acylhydrolase...		Potri.019G008406 [exp]	1.41	0.9989
AT5G45950			GDSL-like Lipase/Acylhydrolase...		Potri.004G051900 [exp]	2.82	0.9981
AT3G60510			ATP-dependent caseinolytic (Cl...		Potri.001G156900 [exp]	3.74	0.9974
AT3G01140	MYB	NOK, ATMYB106	NOECK, myb domain protein 106 ...		Potri.010G165700 [exp]	6.48	0.9968
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.009G054500 [exp]	12.96	0.9977
AT4G24340			Phosphorylase superfamily prot...		Potri.019G050200 [exp]	14.96	0.9975
AT5G48930		HCT	hydroxycinnamoyl-CoA shikimate...		Potri.005G028000 [exp]	18.81	0.9974
AT4G14930			Survival protein SurE-like pho...		Potri.010G088100 [exp]	19.28	0.9840
AT5G06720		ATPA2	peroxidase 2 (.1)		Potri.003G214800 [exp]	19.74	0.9936	Pt-PRX1.16
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G006000 [exp]	21.54	0.9973	CYP81S3,Pt-CYP81.3

Compare expression of checked genes

Potri.018G025200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.