Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25310 518 / 0 Exostosin family protein (.1) AT5G03795 432 / 1e-147 Exostosin family protein (.1) AT3G07620 423 / 7e-145 Exostosin family protein (.1) AT5G11130 416 / 6e-142 Exostosin family protein (.1) AT5G20260 405 / 5e-138 Exostosin family protein (.1) AT5G33290 394 / 7e-133 XGD1 xylogalacturonan deficient 1 (.1) AT3G42180 380 / 5e-128 Exostosin family protein (.1.3) AT4G16745 342 / 3e-112 Exostosin family protein (.1.2) AT4G32790 329 / 1e-106 Exostosin family protein (.1) AT5G19670 318 / 5e-102 Exostosin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G171100 [exp] 450 / 1e-154 AT5G03795 476 / 1e-164 Exostosin family protein (.1) Potri.014G170900 [exp] 444 / 6e-153 AT3G07620 572 / 0.0 Exostosin family protein (.1) Potri.006G118000 [exp] 439 / 2e-150 AT5G03795 608 / 0.0 Exostosin family protein (.1) Potri.006G064600 [exp] 417 / 4e-142 AT5G20260 543 / 0.0 Exostosin family protein (.1) Potri.018G025200 [exp] 407 / 1e-138 AT5G11130 530 / 0.0 Exostosin family protein (.1) Potri.T124507 [exp] 405 / 5e-138 AT3G42180 526 / 0.0 Exostosin family protein (.1.3) Potri.T124607 [exp] 405 / 6e-138 AT5G20260 545 / 0.0 Exostosin family protein (.1) Potri.018G124832 [exp] 405 / 1e-137 AT3G42180 524 / 0.0 Exostosin family protein (.1.3) Potri.006G064700 [exp] 405 / 2e-137 AT5G20260 563 / 0.0 Exostosin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001917 [exp] 575 / 0 AT5G25310 499 / 3e-174 Exostosin family protein (.1) Lus10001958 [exp] 464 / 3e-163 AT5G25310 372 / 1e-127 Exostosin family protein (.1) Lus10039142 [exp] 448 / 2e-153 AT5G03795 603 / 0.0 Exostosin family protein (.1) Lus10013790 [exp] 447 / 9e-153 AT5G03795 602 / 0.0 Exostosin family protein (.1) Lus10008751 [exp] 441 / 8e-151 AT3G07620 542 / 0.0 Exostosin family protein (.1) Lus10025178 [exp] 439 / 1e-150 AT5G03795 471 / 5e-163 Exostosin family protein (.1) Lus10016058 [exp] 407 / 3e-140 AT5G03795 439 / 1e-152 Exostosin family protein (.1) Lus10005186 [exp] 398 / 1e-134 AT5G20260 513 / 3e-180 Exostosin family protein (.1) Lus10027707 [exp] 394 / 2e-133 AT5G20260 526 / 0.0 Exostosin family protein (.1) Lus10039980 [exp] 374 / 4e-124 AT5G20260 489 / 2e-169 Exostosin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03016 [poplar] [flax] Exostosin Exostosin family
Representative CDS sequence Show only first row Show all	>Potri.018G025400.2 pacid=42800517 polypeptide=Potri.018G025400.2.p locus=Potri.018G025400 ID=Potri.018G025400.2.v4.1 annot-version=v4.1 ATGGAAACCAATTCATCTGCATTGATTTCTTTACTGCTATTCCTTTCCGTTTTGCTCCTGTTTGGTTACATAAATAACAATTTCTTCTCTGTTAATTCTT CTCCTAAATTTGAATACACAACAGTTTTCTCAGTTCCAATCGTTGAGTTACAAACAAAAGCAATATCAATCAGTACCAGCTCTGATCATCATCACGATGA TCCAATCCTCACCGTTCACAATTCTGCTGCTCCATCTAACAACACCACTGTACTCACTGTAACTAAAAATGTGAAGAAGAAGAAGAAGAAAAATGTGAAG TTGAGCAAAGAAGAAGAAGAGATGGAGCACGGACTTGCAAGAGCTCGAGCTACGATTAGAAAGGCAGCTTCGTTAACTGGAAATATTTCGAGGATCGTCG CTGACGGTGATGAAAACGACGTCGCCGGTACTATTTATCTTAATGCAAGAGCATTTTATCAAAGTTACATGGAGATGGAGAAGAGATTCAAGGTCCACGT GTACTCAGAAGGAGAGCTACCAATTGTCCACGACGGGCCATGCAAAGACATATACACAATAGAGGGGAGGTTCATACACGAGATGGAGCACGGAGCCAAG AGGTTTAAAACAAGGGATCCTCGACGAGCTCATGTTTACTTTATGCCTTTCAGTGTCACATGGATGGTCAAGTATCTCTATAAGCCTCTCACCTACGATC ACACTGCAATGAAACAATTTGTGGCTGATTATGTGAGAGTGGTATCGAGCAAATACCCCTTCTGGAATAGAACTCAAGGAGCCGATCACTTCATGCTTTC CTGTCATGATTGGGGTCCCCATGCTTCCCACGGCAATCCTTTCCTTTACAATACATCAATACGTGTCCTGTGCAATGCCAATAGCTCAGAGGGTTTCAGC CCTCGAAAGGACGTAAGCCTTCCTGAAATTCACCTCTATGGTGGCAATGTACCCCCCAAACTCATCTCGCCTCCACCAGCCACCAGCCCACGCCCCTACC TTGCATTCTTTTCCGGTGGGCTTCATGGCCCAATCCGCCCCATCCTCCTAGACCACTGGAAAGGCCGCGACCCTGATCTTCAAGTCTATGAGTACCTCCC TAAAGACCTGGACTACTATTCATTTATGCTCCGGTCCAAGTTTTGTCTGTGTCCAAGTGGTCATGAAGTGGCTAGTCCAAGAATTGTTGAGGCCATTTAC GCTGAATGTGTGCCTGTTATTTTATCGGACCATTATGTGCTCCCATTCAGTGATGTCTTGAGATGGGAGGCCTTTGCAATACAGGTGAATGTATCAGAGA TACCAAGATTGAAGGAGGTACTGATTTCTGTTCCAGAAGAGAGATATAGGAGGCTTAAGGAGGGTTTAAGAGCTATTAGGAAGCATTTTGTGTTGAACCG GCCTGCTAAGAGATTTGATGTGTTCCACATGATTTTACACTCCATTTGGCTTAGGAGATTAAATTTAAGACTTGTTTAG
AA sequence Show only first row Show all	>Potri.018G025400.2 pacid=42800517 polypeptide=Potri.018G025400.2.p locus=Potri.018G025400 ID=Potri.018G025400.2.v4.1 annot-version=v4.1 METNSSALISLLLFLSVLLLFGYINNNFFSVNSSPKFEYTTVFSVPIVELQTKAISISTSSDHHHDDPILTVHNSAAPSNNTTVLTVTKNVKKKKKKNVK LSKEEEEMEHGLARARATIRKAASLTGNISRIVADGDENDVAGTIYLNARAFYQSYMEMEKRFKVHVYSEGELPIVHDGPCKDIYTIEGRFIHEMEHGAK RFKTRDPRRAHVYFMPFSVTWMVKYLYKPLTYDHTAMKQFVADYVRVVSSKYPFWNRTQGADHFMLSCHDWGPHASHGNPFLYNTSIRVLCNANSSEGFS PRKDVSLPEIHLYGGNVPPKLISPPPATSPRPYLAFFSGGLHGPIRPILLDHWKGRDPDLQVYEYLPKDLDYYSFMLRSKFCLCPSGHEVASPRIVEAIY AECVPVILSDHYVLPFSDVLRWEAFAIQVNVSEIPRLKEVLISVPEERYRRLKEGLRAIRKHFVLNRPAKRFDVFHMILHSIWLRRLNLRLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25310			Exostosin family protein (.1)		Potri.018G025400 [exp]	0	1
AT2G37210		LOG3	LONELY GUY 3, lysine decarboxy...		Potri.016G090500 [exp]	9.38	0.7839
AT1G02550			Plant invertase/pectin methyle...		Potri.014G119200 [exp]	30.49	0.6860
AT2G37300		ABCI16	ATP-binding cassette I16, unkn...		Potri.016G082700 [exp]	35.59	0.7242
AT3G57830			Leucine-rich repeat protein ki...		Potri.006G057500 [exp]	61.64	0.7062
AT3G13960	GRF	ATGRF5	growth-regulating factor 5 (.1...		Potri.018G065400 [exp]	64.69	0.7104
AT2G33420			Protein of unknown function (D...		Potri.008G170200 [exp]	65.75	0.6396
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074800 [exp]	82.26	0.6837
AT5G05730		JDL1, WEI2, TRP...	WEAK ETHYLENE INSENSITIVE 2, T...		Potri.010G190600 [exp]	104.47	0.6967
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.015G098900 [exp]	105.85	0.6185
AT5G58560		FOLK	farnesol kinase, Phosphatidate...		Potri.009G074700 [exp]	113.36	0.6393

Compare expression of checked genes

Potri.018G025400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.