Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25320 604 / 0 ACT-like superfamily protein (.1) AT1G76990 413 / 3e-141 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT3G01990 362 / 2e-121 ACR6 ACT domain repeat 6 (.1) AT2G03730 358 / 9e-120 ACR5 ACT domain repeat 5 (.1.2) AT1G69040 358 / 1e-119 ACR4 ACT domain repeat 4 (.1.2) AT5G65890 353 / 3e-117 ACR1 ACT domain repeat 1 (.1.2) AT1G12420 337 / 2e-111 ACR8 ACT domain repeat 8 (.1) AT4G22780 326 / 2e-107 ACR7 ACT domain repeat 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G256500 [exp] 785 / 0 AT5G25320 611 / 0.0 ACT-like superfamily protein (.1) Potri.002G074800 [exp] 428 / 3e-147 AT1G76990 676 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.005G185600 [exp] 428 / 5e-147 AT1G76990 709 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Potri.007G006500 [exp] 407 / 2e-138 AT5G65890 567 / 0.0 ACT domain repeat 1 (.1.2) Potri.014G006700 [exp] 382 / 3e-128 AT5G65890 540 / 0.0 ACT domain repeat 1 (.1.2) Potri.003G167800 [exp] 374 / 5e-126 AT1G69040 486 / 1e-170 ACT domain repeat 4 (.1.2) Potri.001G060100 [exp] 372 / 3e-125 AT1G69040 505 / 7e-178 ACT domain repeat 4 (.1.2) Potri.001G115600 [exp] 362 / 2e-121 AT1G12420 627 / 0.0 ACT domain repeat 8 (.1) Potri.001G327000 [exp] 362 / 3e-121 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028646 [exp] 412 / 2e-140 AT1G76990 699 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10018943 [exp] 412 / 4e-138 AT1G76990 686 / 0.0 ACT domain repeat 3 (.1.2.3.4.5) Lus10003136 [exp] 382 / 5e-129 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10011329 [exp] 377 / 3e-127 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10011715 [exp] 373 / 7e-125 AT5G65890 520 / 0.0 ACT domain repeat 1 (.1.2) Lus10041543 [exp] 356 / 7e-119 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10012550 [exp] 356 / 8e-119 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10036827 [exp] 346 / 5e-115 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10019191 [exp] 196 / 4e-59 AT1G69040 434 / 2e-152 ACT domain repeat 4 (.1.2) Lus10006662 [exp] 178 / 5e-51 AT4G22780 483 / 4e-170 ACT domain repeat 7 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0070 [poplar] [flax] ACT PF13740 [poplar] [flax] ACT_6 ACT domain
Representative CDS sequence Show only first row Show all	>Potri.018G025500.1 pacid=42802161 polypeptide=Potri.018G025533.1.p locus=Potri.018G025500 ID=Potri.018G025500.1.v4.1 annot-version=v4.1 ATGAAGAATGTTTGCTGGCCTTACTTTGATCCTGATTTTGATAGTCTGCCTGAGAGGATATTTGGGCCCACTTGTAGAGTTTGTATTGATAATGAAAGCA TGGAAGATTGCACAGTTGTGAAGGTTGACAGCGTAAATAAGCAGGGCCTCCTCCTGGAGGTTGTGCAAGTTCTGACAGACTTGAATCTCACCATCGCAAA AGGCTATATTTCTTCCGATGCTGGGTGGTTCATGGATGTTTTTCATGTTAAAGATGAGCATGGCAAGAAACTTAGAGATCAAAATGTTATCAACTATATC CAGCAGGCTATAGGGACAACAAGGGAGAGTACCCCAAGCCCTCCTAATGCAAGAGCATATACCAACAATATTTTCGAAGCCGACCATTCAAGCGAGCACA CGGCCATTGAAATGTCAGGAACCGACAGGCCTGGCCTCTTCTCCGAGATATCAGCTGCCTTGGCAGACCTTCAATGCAACATTGTGGAAGTCCATGCTTG GAGCCACAATGCTCGATTAGCTTGTGTCGCTTATATTTCCGATCCATCGTCCCACACACCAATTGAAGACCCTCACCGCCTCGCCTCCATCGAGGATCAT CTAACCACAGTGCTCCGCGCCAACACAGTGCGAAGCGCTGGTGAACCATCCCAAATCAACAATCGAGAAGTGAAGACCGGGGGCTTTCTTGGAGGGGAAG GCACCGTAAGCAATGTAGAGAGGAGGTTGCATCAACTCATGCTTTCGGTAAGAGATTTTGATGGGCCTATAAGCTCATCCTCAACGGGAACCGGATTGAA TAACAACAAAGGAGGGTCAAAGATGGTGGTTTCGATCGAGAACTGTGACCAAAAGGAGTATTCAATTGTTAACATAGAGTGCAAGGATCGGCGAAGGCTC ATGTTCGATACCATATGCACACTTAACGATATGCAATATGTGATTTTCCATGCTTCGGTTAGCTCTGATCATGATGGCCGTGCATTTCAAGAATACTTCA TTAGACACAAGGATGGATATGCACGTAACACAGAGAGTGAGAAAGAACGAGTAATTAAATGCTTAGAGGCTGCCATAGAGCGTCGGGTTAGTGAGGGTGT TCTGCTGAAGTTACGTGCAGAAAATAGATTAGGGCTACTATCGGACATAACTCGAGTTCTCCGAGAAAATGGACTGGCCGTCGTTCGAGCAGATGTAGCA ACAGAAGGAGAGAAAGCAGTGAATGCTTTCTATGTAAGAGACATCTCAGGGAATGAAGTAGATATGGGATTCATCAAGTCAATGAAGAAAGAAATGGGTC TAACTGATCTTGAAGTGATCAAGAATGATACGTCGACGACGACGTCGCCGACGAGGACGATCACAAATATTAGCCCACATGAAAGGCATCGTTTCTCTTT TGGAGACTTGCTCAAATCTCAAATTGAACGATTTTCTCACAACTTCGTTGCAATAAATTAA
AA sequence Show only first row Show all	>Potri.018G025500.1 pacid=42802161 polypeptide=Potri.018G025533.1.p locus=Potri.018G025500 ID=Potri.018G025500.1.v4.1 annot-version=v4.1 MKNVCWPYFDPDFDSLPERIFGPTCRVCIDNESMEDCTVVKVDSVNKQGLLLEVVQVLTDLNLTIAKGYISSDAGWFMDVFHVKDEHGKKLRDQNVINYI QQAIGTTRESTPSPPNARAYTNNIFEADHSSEHTAIEMSGTDRPGLFSEISAALADLQCNIVEVHAWSHNARLACVAYISDPSSHTPIEDPHRLASIEDH LTTVLRANTVRSAGEPSQINNREVKTGGFLGGEGTVSNVERRLHQLMLSVRDFDGPISSSSTGTGLNNNKGGSKMVVSIENCDQKEYSIVNIECKDRRRL MFDTICTLNDMQYVIFHASVSSDHDGRAFQEYFIRHKDGYARNTESEKERVIKCLEAAIERRVSEGVLLKLRAENRLGLLSDITRVLRENGLAVVRADVA TEGEKAVNAFYVRDISGNEVDMGFIKSMKKEMGLTDLEVIKNDTSTTTSPTRTITNISPHERHRFSFGDLLKSQIERFSHNFVAIN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G25320			ACT-like superfamily protein (...		Potri.018G025500 [exp]	0	1
AT5G06860		ATPGIP1, PGIP1	polygalacturonase inhibiting p...		Potri.006G058600 [exp]	7.14	0.9639	Pt-PGIP.4
AT5G49450	bZIP	ATBZIP1	basic leucine-zipper 1 (.1)		Potri.010G142900 [exp]	11.13	0.9485
AT1G58420			Uncharacterised conserved prot...		Potri.014G014500 [exp]	11.66	0.9631
AT2G44480		BGLU17	beta glucosidase 17 (.1.2)		Potri.001G223500 [exp]	12.36	0.9671
AT3G12490		ATCYS6, ATCYSB	ARABIDOPSIS THALIANA PHYTOCYST...		Potri.001G225800 [exp]	19.33	0.9644
AT1G80160		GLYI7	glyoxylase I 7, Lactoylglutath...		Potri.001G171600 [exp]	23.36	0.9262
AT5G13330	AP2_ERF	RAP2.6L	related to AP2 6l (.1)		Potri.001G067600 [exp]	25.45	0.9433
AT1G54870			NAD(P)-binding Rossmann-fold s...		Potri.008G149201 [exp]	28.61	0.9510
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.001G451100 [exp]	28.61	0.9542	Pt-RCOMT1.5
AT2G23620		ATMES1	ARABIDOPSIS THALIANA METHYL ES...		Potri.007G037200 [exp]	32.21	0.9596

Compare expression of checked genes

Potri.018G025500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.