Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25320 2378 / 0 TRAF-like family protein (.1) AT2G25330 1023 / 0 TRAF-like family protein (.1) AT3G11910 93 / 2e-18 AtUBP13, UBP13 ubiquitin-specific protease 13 (.1.2) AT5G06600 92 / 3e-18 AtUBP12, UBP12 ubiquitin-specific protease 12 (.1.2.3) AT3G58210 87 / 7e-18 TRAF-like family protein (.1) AT3G58290 79 / 2e-15 TRAF-like superfamily protein (.1.2.3) AT3G58340 79 / 4e-15 TRAF-like family protein (.1) AT5G26260 79 / 5e-15 TRAF-like family protein (.1) AT3G17380 73 / 2e-13 TRAF-like family protein (.1) AT3G58250 71 / 2e-12 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G256400 [exp] 3004 / 0 AT2G25320 2377 / 0.0 TRAF-like family protein (.1) Potri.006G065300 [exp] 632 / 0 AT2G25320 610 / 0.0 TRAF-like family protein (.1) Potri.006G198300 [exp] 100 / 1e-20 AT5G06600 1954 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.016G064100 [exp] 100 / 1e-20 AT5G06600 1943 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.003G103200 [exp] 95 / 1e-20 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.008G012600 [exp] 95 / 3e-19 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.014G055400 [exp] 90 / 6e-19 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.010G245100 [exp] 92 / 3e-18 AT5G06600 1907 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Potri.008G199400 [exp] 85 / 5e-17 AT3G17380 211 / 6e-66 TRAF-like family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001490 [exp] 2593 / 0 AT2G25320 2419 / 0.0 TRAF-like family protein (.1) Lus10002926 [exp] 2517 / 0 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10005821 [exp] 346 / 7e-108 AT2G25320 309 / 7e-96 TRAF-like family protein (.1) Lus10029309 [exp] 99 / 2e-20 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 95 / 5e-19 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10043456 [exp] 93 / 2e-18 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 92 / 3e-18 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10019772 [exp] 80 / 2e-14 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10025569 [exp] 78 / 2e-14 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10022207 [exp] 75 / 5e-13 AT1G04300 722 / 0.0 TRAF-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14631 [poplar] [flax] FancD2 Fanconi anaemia protein FancD2 nuclease
Representative CDS sequence Show only first row Show all	>Potri.018G025600.1 pacid=42800820 polypeptide=Potri.018G025666.1.p locus=Potri.018G025600 ID=Potri.018G025600.1.v4.1 annot-version=v4.1 ATGAAACACCACACCACCACCATCGCCACTTCAATGGAAGCGGCAGCCACATCCTCATCCTGCTCCTCATCTGCCCCTACACCTTCCCCCTCCGACCAAT CCTCTCTCGCCACATCATCATCCACTACCACAGCAACGCCAACATCAACCACCACAACAATTGACGATATCACCGTGGGGACCACGCGAGACGGAACGAA CGGAGCGGCGGCAGAAGCCGTTACAATCGATCGGCGAGGGGAGTATTCGGCAATCTGCAAATGGACGGTACAGAATTTTCCACGTGTCAAAGCTAGGGCA TTATGGAGTAAATATTTTGAGGTAGGCGGTTACGATTGCCGTTTATTAATTTACCCTAAAGGTGACTCTCAAGCTTTGCCTGGCTACATCTCAATCTACC TTCAAATCATGGACCCGCGCGGTACATCATCGTCAAAATGGGATTGTTTTGCCAGCTACCGTTTATCAATTTTTAATCCACTTGATGATTCCAAAACTAT ACACCGTGATTCATGGCATCGGTTTTCCAGCAAGAAAAAATCACACGGTTGGTGTGATTTTACCCCGGCTTCTACCGTTTTCGATTCCAAATTAGGTTAT TTGTTTAATAATGATTGCGTTTTAATCACCGCCGATATTTTGATTTTAAATGAGTCAGTCAGTTTTATCCGCGACAATAGTAGTAGCACTAGTAATAATG AGGTGCAATCGGGGGTTTCTTTATCGATTTCGTCGAATTCGGTAGTTGTGGGACCAGTATCGGATGTGTTGAGTGGGAAATTTACGTGGAAAGTGCATAA TTTTAGCTTGTTCAAGGAAATGATTAAGACACAGAAGATAATGAGTCAGGTGTTTCCTGCTGGGGAATGTAATTTAAGGATTAGTGTGTATCAGAGTTCA GTGAATGGTACGGATTATTTGTCTATGTGTTTGGAGAGTAAGGATACGGAGAAGACAAGTGTTTCGGATAGGAGTTGTTGGTGTTTGTTTAGAATGTCTG TTTTGAATCAAAAGGCTGGGGGGAGCAATCATGTGCATAGGGATTCATATGGACGGTTTGCGGCAGATAATAAAAGCGGGGATAATACAAGTTTGGGGTG GAATGATTATATGAAGATGGCTGATTTTGTTGGGGCTGAATCAGGGTTTTTGGTTGATGATACTGCTGTTTTTAGCACTTCATTTCATGTGATTAAGGAG TTCAGTAGCTTTTCAAAGAATGGGGGTTTAAATGGAGGGAGGATTGGGGGTGGAGCAAGGAAGTCTGATGGGCATATGGGGAAATTCACTTGGAGGATTG AGAATTTTACGAGGTTGAAGGATCTTTTGAAGAAGAGGAAGATTACTGGTCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGGAACCGGGATTGCCGACT CATTGTTTATCCTCGAGGGCAGTCTCAGCCACCATGCCACCTTTCAGTGTTTCTTGAAGTTACGGATTCACGAAATACTTCTAGCGACTGGAGTTGTTTT GTGAGTCATCGATTGTCAGTTGTGAACCAGAGGATGGAGGAAAAATCTGTCACAAAGGAATCTCAGAATCGCTATTCCAAAGCAGCCAAAGATTGGGGTT GGCGTGAATTTGTGACACTTACAAGCCTGTTTGATCAAGATTCTGGGTTTCTTGTTCAAGATACTGTTGTATTCTCTGCAGAGGTTCTCATCCTGAAAGA AACATCCATAATGCAAGATTTTATTGATCAGGATACCGAGTCAACTAATAGTGCTTCCCAGATTGATGGGGTTGGCAAAAGAAGTTCATTTACGTGGAAA GTGGAGAACTTCTTGTCCTTCAAAGAAATAATGGAAACTCGAAAAATATTTAGCAAGTTCTTCCAAGCTGGTGGTTGTGAGCTTCGGATTGGTGTGTATG AGTCCTTTGACACCATATGCATATACTTAGAGAGTGATCAGTCAGTTGGTAGTGATCCAGATAAAAACTTTTGGGTCAGATACAGAATGGCTGTAGTGAA TCAAAAAAATCCTGCCAAGACTGTGTGGAAGGAGTCATCTATTTGTACAAAGACATGGAATAATTCTGTCCTGCAATTCATGAAGGTGTCAGATATGTTG GAAACAGATGCAGGGTTCCTTGTACGAGACACCGTTGTTTTTGTCTGTGAAATATTAGATTGCTGCCCATGGTTCGAGTTTTCAGATTTAGAGGTTTTGG CATCTGAGGATGATCAGGATGCTTTAACAACTGATCCTGATGAACTCATTGATTCTGATGATAGTGAAGGAATAAGTGGAGATGAAGAAGATATCTTTAG AAACCTTCTTTCCAGAGCTGGGTTTCACCTCACATATGGAGATAATCCTTCGCAGCCACAGGTTACTTTAAGAGAAAAGCTTTTAATGGATGCTGGTGCC ATTGCTGGTTTTCTGACTGGGCTACGTGTTTATCTTGATGACCCTGCTAAAGTAAAGAGGCTGCTTCTTCCAACAAAACTTTCCAGTAGCAATGATGCGA AGAAGGCCACAAAGGCTGATGAATCTTCCCCCAGCTTGATGAACTTGTTGATGGGAGTAAAAGTTTTGCAGCAGGCAATTATAGATTTACTTTTGGACAT AATGGTTGAATGTTGCCAACCTTCTGAAGGAAGTTCAAATGATGATTCATCTGATGCACACCCAAAGCCTTCTCTTGATGGCAGTGGTGCGGCCAGCCCA TTGGAATCTGACAGGGAAAGTGGAGCAACAGAATCCGCTCGGTTTCCTGTACATGAAAGATTGGATTCTGGTCTAGATGATTCTACTAGAGCATCTGCTG TTCAGAGCTCTGACATAAATGGGACTGGTATTCCTGGACAAGCTCTTCCAGGACAGCCTATTCATCCACCCGTAACAACAGCAGGGGGTGCTTCAGGAAA TGCTTCACTTCGCTCTAAGTCGGACTTTCAGACCAAGTGGCCGGAACAATCTGAGGAGCTCTTGGGACTGATTGTCAACTCACTGAGGGCCCTAGATGGA GCTGTTCCACAAGGCTGCCCAGAGCCAAGACGAAGACCGCAGTCTGCGCAAAAGATAGCTCTTGTGTTGGATAAAGCTCCTAAGCATCTGCAGCCTGACC TGGTTTCTTTGGTACCCAAATTGGTTGAGCATGCAGAGCATCCTCTGGTTGCTTATGCACTTCTTGAAAGACTTCAAAAGCCTGATGCAGAACCTGCATT GCGGATACCTGTTTTTGGTGCTCTTAGTCAACTGGAGTGTGGCAGTGATGTGTGGGAGCGTGTTCTATTTCAGTCTTTTGATCTTTTGGCCGACTCAAAT GATGAACCTCTTGCTGCTACCATTGATTTTATATTCAAAGCCGCATCCCAATGCCAACATCTTCCTGAAGCAGTCAGATCTGTTCGTAGTAGGCTAAAAA TTTTGGGGGCTGATGTGTCCCCTTTTGTCCTGGATTTTTTGAGCAAAACTGTGAATAGTTGGGGAGATGTTGCTGAAACCATACTAAGAGATATTGATTG CGATGATGACCTTGGTGACAGCTGCTCAACATTGCCTTGTGGTCTTTTCTTGTTTGGAGAAAATGCATCTGCTGCTGAAAGGTTGCAGGTGGTGGATGAG CAGACATTCCATTCTAGCAGTCATTTTTCTGACATTTATATTCTGATTGAGATGTTATCCATACCTTGCCTTGCTCTTGAAGCTTCTCAAACATTTGAGA GGGCTGTAGGTCGAGGAGCAATTATGGCTCAATCTGTAGCAATTGTCTTGGAAAGGCGTCTCGCTCAAAGATTGAATTTTAATGCCAGATTTGTTGCTGA AAATTTTCAGCAGGAAGATGCTATACTAGAGGGAGAAGCCAGTGAACAGCTGCGAGTTCAACGGGATGATTTCTCTGTTGTTCTTGGTCTTGCTGAGACA CTGGCCCTTTCTAGAGACCTTTGTGTGAAGGGATTTGTTAAGATGCTGTACATGATACTATTTAAATGGTATGCAAATGAGCCCTGTAGAGGGAGAATGC TAAAGAGACTTGTTGATCATGCCACCAGTACTACAGATAATAGTCGTGATGTAGATCTAGATTTGGATATATTGGCTATTTTAGTTTGCGAGGAGCAAGA GATTGTTAAACCTGTTCTGAGCATGATGCGGGAGGTTGCTGAACTTGCAAATGTTGACCGGGCTGCTCTTTGGCACCAGCTATGTGCTAGTGAAGATGAA ATTATCCGTATGCGTGATGAGAGGAAAGCAGAAATTTCCAATATGGCTCGGGAGAAGGCAAATCTATCTCAAAAATTGAGTGACTCTGAGGCCACTAACA ATAGGCTAAAGTCTGAAATGAGGGCTGAGATGGATCGCTTCGCTCGGGAGAAGAAGGAACTTTCTGAACAGATACATGAAGTTGAGAGTCAGCTTGAATG GGTACGTTCAGAGAGAGATGATGAAATTATCAAGCTTACAGTTGAGAAGAAAGTTCTTCAAGACCGTCTTCATGATGCTGAGACACAACTCTCCCAATTG AAGTCCCGAAAACGGGATGAATTGAAGAGAGTAGTAAAAGAGAAAAATGCTCTCACTGAGAGGCTGAAGAGTGCTGAAGCTGCACGAAAAAGATTTGATG AAGAACTGAAACGATATGCAACAGAGAATGTGACCAGGGAAGAAATCCGTCAGTCATTGGAGGACGAGGTTCGGAGGTTGACACAAACAGTTGGGCAAAC GGAAGGAGAGAAGAGGGAGAAGGAAGAGCAGGTTGCTAGGTGTGAAGCATATATTGATGGGATGGAATCAAAGTTGCAGGCCTGTCAGCAATATATCCAC ACCCTTGAAGCTTCTCTTCAAGAAGAAATGACCCGACACGCCCCTCTTTATGGAGCCGGATTGGAAGCTCTATCGATGCAAGAGTTAGAGACAATATCAC GTATTCATGAGGAAGGTCTGAGGCAGATTCATGTCCTCCAACAGCGCAAGGGGAGTCCAGCCAGTCCTCATGTGAGCCCCCACACCTTACCCCACAATCA TGGGATGTATCCTGCTGCTCCACCTCCAATGGCGGTGGGATTGCCTCCACTGATTTCAAATGGTGTTGGGATCCACAGCAACGGGCACATAAATGGAGCA GTTGGTCCATGGTTTAACCATACATAA
AA sequence Show only first row Show all	>Potri.018G025600.1 pacid=42800820 polypeptide=Potri.018G025666.1.p locus=Potri.018G025600 ID=Potri.018G025600.1.v4.1 annot-version=v4.1 MKHHTTTIATSMEAAATSSSCSSSAPTPSPSDQSSLATSSSTTTATPTSTTTTIDDITVGTTRDGTNGAAAEAVTIDRRGEYSAICKWTVQNFPRVKARA LWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLSIFNPLDDSKTIHRDSWHRFSSKKKSHGWCDFTPASTVFDSKLGY LFNNDCVLITADILILNESVSFIRDNSSSTSNNEVQSGVSLSISSNSVVVGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSQVFPAGECNLRISVYQSS VNGTDYLSMCLESKDTEKTSVSDRSCWCLFRMSVLNQKAGGSNHVHRDSYGRFAADNKSGDNTSLGWNDYMKMADFVGAESGFLVDDTAVFSTSFHVIKE FSSFSKNGGLNGGRIGGGARKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCF VSHRLSVVNQRMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVVFSAEVLILKETSIMQDFIDQDTESTNSASQIDGVGKRSSFTWK VENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYRMAVVNQKNPAKTVWKESSICTKTWNNSVLQFMKVSDML ETDAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSDDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGA IAGFLTGLRVYLDDPAKVKRLLLPTKLSSSNDAKKATKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGSSNDDSSDAHPKPSLDGSGAASP LESDRESGATESARFPVHERLDSGLDDSTRASAVQSSDINGTGIPGQALPGQPIHPPVTTAGGASGNASLRSKSDFQTKWPEQSEELLGLIVNSLRALDG AVPQGCPEPRRRPQSAQKIALVLDKAPKHLQPDLVSLVPKLVEHAEHPLVAYALLERLQKPDAEPALRIPVFGALSQLECGSDVWERVLFQSFDLLADSN DEPLAATIDFIFKAASQCQHLPEAVRSVRSRLKILGADVSPFVLDFLSKTVNSWGDVAETILRDIDCDDDLGDSCSTLPCGLFLFGENASAAERLQVVDE QTFHSSSHFSDIYILIEMLSIPCLALEASQTFERAVGRGAIMAQSVAIVLERRLAQRLNFNARFVAENFQQEDAILEGEASEQLRVQRDDFSVVLGLAET LALSRDLCVKGFVKMLYMILFKWYANEPCRGRMLKRLVDHATSTTDNSRDVDLDLDILAILVCEEQEIVKPVLSMMREVAELANVDRAALWHQLCASEDE IIRMRDERKAEISNMAREKANLSQKLSDSEATNNRLKSEMRAEMDRFAREKKELSEQIHEVESQLEWVRSERDDEIIKLTVEKKVLQDRLHDAETQLSQL KSRKRDELKRVVKEKNALTERLKSAEAARKRFDEELKRYATENVTREEIRQSLEDEVRRLTQTVGQTEGEKREKEEQVARCEAYIDGMESKLQACQQYIH TLEASLQEEMTRHAPLYGAGLEALSMQELETISRIHEEGLRQIHVLQQRKGSPASPHVSPHTLPHNHGMYPAAPPPMAVGLPPLISNGVGIHSNGHINGA VGPWFNHT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25320			TRAF-like family protein (.1)		Potri.018G025600 [exp]	0	1
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Potri.018G110100 [exp]	2.82	0.8831
AT2G25320			TRAF-like family protein (.1)		Potri.006G256400 [exp]	6.92	0.8173
AT1G04300			TRAF-like superfamily protein ...		Potri.010G075000 [exp]	7.34	0.8445
AT5G13010		EMB3011	embryo defective 3011, RNA hel...		Potri.010G172500 [exp]	7.74	0.8357
AT4G24680		MOS1	modifier of snc1 (.1)		Potri.015G079800 [exp]	8.24	0.8636
AT3G47120	C3HZnF		RNA recognition motif (RRM)-co...		Potri.009G044900 [exp]	9.53	0.8261
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Potri.007G113300 [exp]	10.72	0.8608	HAF902
AT5G16420			Pentatricopeptide repeat (PPR-...		Potri.012G031600 [exp]	14.00	0.7940
AT5G16680			RING/FYVE/PHD zinc finger supe...		Potri.013G077900 [exp]	16.49	0.8395
AT4G32620			Enhancer of polycomb-like tran...		Potri.018G034900 [exp]	18.73	0.7949

Compare expression of checked genes

Potri.018G025600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.