Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32160 736 / 0 Phox (PX) domain-containing protein (.1) AT2G25350 634 / 0 Phox (PX) domain-containing protein (.1) AT3G15920 496 / 2e-166 Phox (PX) domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G256000 [exp] 1147 / 0 AT4G32160 758 / 0.0 Phox (PX) domain-containing protein (.1) Potri.001G201900 [exp] 631 / 0 AT3G15920 590 / 0.0 Phox (PX) domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002925 [exp] 840 / 0 AT4G32160 709 / 0.0 Phox (PX) domain-containing protein (.1) Lus10001496 [exp] 400 / 2e-133 AT4G32160 294 / 1e-92 Phox (PX) domain-containing protein (.1) Lus10001495 [exp] 348 / 6e-116 AT4G32160 323 / 9e-107 Phox (PX) domain-containing protein (.1) Lus10023125 [exp] 210 / 3e-58 AT3G15920 365 / 2e-115 Phox (PX) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00787 [poplar] [flax] PX PX domain
Representative CDS sequence Show only first row Show all	>Potri.018G026000.1 pacid=42800838 polypeptide=Potri.018G026000.1.p locus=Potri.018G026000 ID=Potri.018G026000.1.v4.1 annot-version=v4.1 ATGCAGAGGCTGCGGAGTCCACCGAAGCACAGGCACGACGGGACTTCGCCGCTGCCGTTAGGGATGGATTGGAGTCCTCCGCCTCGAAAATGGAGTGCGC GAGAAACCATTTGGCCTCATGATCCTAGAACGGGATGGAGTTACTGTGTCGCTATACCGTCCTGGGTCGTGGTCCCAAAATCAAGAGATTCAGATCCCGT AGTGTTTTACAGGGTTCAGGTGGGTTTACAATCACCAGAAGGGGTTACAACCACGCGTGGAGTGTTGAGAAGATTTAATGATTTTATGAAGTTATTTACT GATCTTAAGAAGGCATTTCCTAGAAAAACTCTCCCACCAGCCCCACCCAAGGGACTTCTGCGTTTGAAAAGCAGGGCACTCTTGGAAGAGAGAAGGTACT CTTTGGAGCAGTGGATGACAAAACTGCTGTCTGACATTGATTTATCAAGAAGTGTTTCAGTGGCATCCTTTCTTGAATTAGAAGCTGCTGCGAGATCTTC ATTCCAAGATGTAAATCAGCAGTCATCAGAAGCAAGTCCCACCGGTGATAGTTCAACTTCCTCGCTTCAGATACCTCCAAATTTAAGTTCTCTTGCTACC GGTTCATCAATCGCATCAGATTATGGTAGTGATACTGCTTATGAAACATCTGATCTTGGAACACCTAGGTTAGAAAGAGATGAAAATTTTGGAATTGGCT TGGGGGATCTAGCACTGGATGAAGATCTGACCAGTCCTATGGAAAAACTTGTGAAGTATGGCATGTCAAACATTGATGAGGGACTGTTTATGGGACAGAC TATTCTAGAGCAACTAGAAGGTCTTCCTAGGCACAGACCACATGGTGTGCATATAAAAAATGTCACAGCGAAAGATGTATATAATGGAAATGCATCCAAA GCTTCATTTTTTCCTGGAAATGGGATGGAACTTTTCTCTGAGCCAGGGCCTGCTAAGGCATATGGTCATGTTAGAAAGTTGTCCAGTGAGAGTGTTGGAA GTGACGGAAGTTCTCTACGAGGAAGTGAATTATCAAACGCTGGGATACCAAATTCATCTGGTGATGGATCTCTTGATCTTCCAGGAATAGCTGAGGTATT GAGCTCTGCAGAAGTTGTTGGTAATGCAGAGCTGCAGTTTTCAGGTGATGCACACATAGTACTTCCAATGGATCAGCGTCATAAAATGAACAGGGTTCTA TTAACGATGCAGCGGAGGCTAGTCACAGCTAAAACAGACATGGAAGACCTAATATCAAGATTAAATCAGGAGATAGCCGTAAAAGATTACCTTACAACAA AGGTCAAGGATCTGGAGGTGGAACTCGAAACTAACAAACAGAAAAATAAAGAAAATATGCAGCAAGCTATTTTGATTGAGAGGGAAAGGCTCACCCAAAT GCAGTGGGATATGGAGGAATTGAGACGGAAATCGTTGGAAATGGAATTGAAATTGAAGTCAAAAGAGGGTGAGCAGTCAAGTACAGAATTTCAAATGGCA TCTACCGACCATGAGAAAGACATGGTACTTGAGGAGTTGGATGCTACTAGAAAGCTACTTGAGGATCTGTCTAAGCGATATGAAGAACTTGAAGCGAAAT CGAAAGCAGATATTAAATTTCTTGCAAAAGAATTTAAATCCCTTAAAAATTCCCAGACAACATTAAAGCAGGAGCTTAGTCAATCACTGAAGGAAAAATC TGAAGTTGAGAAACTTCTTCACGAGGAAAGAGAAATGAAGGAGCATGGGAAAATTGCTCGGAAGAAACTGCTACATGATTGTAGGATTCTGTGTGACCAA CTGCAAGAATGCAACGTTAATTTGTTGAGTGAAGATGATAATTTTGTTGTGGACTTTTCACTGGCAGATGCTTTGGATTTGCTGACCACATCTGATGATC AAATTGGCCATCTATTAACGGAGGCACAACAATTATTTGAAGATGATAAAATCACTGCTCCTGACGACAACTTGAGATCAACCGATGATGAACTGAGGAA TATGTTGGCAAATCTCTTCACTGATAATGCCATGTTGAGGAAACAGGTGAACTCTACTATGCGACGTGCTCTTAAAATGGGCAGCATCTCTAGGAGTAGT AACGACGGGGCTCCTTCAAGTAATAATCATGTAGAAAGATAA
AA sequence Show only first row Show all	>Potri.018G026000.1 pacid=42800838 polypeptide=Potri.018G026000.1.p locus=Potri.018G026000 ID=Potri.018G026000.1.v4.1 annot-version=v4.1 MQRLRSPPKHRHDGTSPLPLGMDWSPPPRKWSARETIWPHDPRTGWSYCVAIPSWVVVPKSRDSDPVVFYRVQVGLQSPEGVTTTRGVLRRFNDFMKLFT DLKKAFPRKTLPPAPPKGLLRLKSRALLEERRYSLEQWMTKLLSDIDLSRSVSVASFLELEAAARSSFQDVNQQSSEASPTGDSSTSSLQIPPNLSSLAT GSSIASDYGSDTAYETSDLGTPRLERDENFGIGLGDLALDEDLTSPMEKLVKYGMSNIDEGLFMGQTILEQLEGLPRHRPHGVHIKNVTAKDVYNGNASK ASFFPGNGMELFSEPGPAKAYGHVRKLSSESVGSDGSSLRGSELSNAGIPNSSGDGSLDLPGIAEVLSSAEVVGNAELQFSGDAHIVLPMDQRHKMNRVL LTMQRRLVTAKTDMEDLISRLNQEIAVKDYLTTKVKDLEVELETNKQKNKENMQQAILIERERLTQMQWDMEELRRKSLEMELKLKSKEGEQSSTEFQMA STDHEKDMVLEELDATRKLLEDLSKRYEELEAKSKADIKFLAKEFKSLKNSQTTLKQELSQSLKEKSEVEKLLHEEREMKEHGKIARKKLLHDCRILCDQ LQECNVNLLSEDDNFVVDFSLADALDLLTTSDDQIGHLLTEAQQLFEDDKITAPDDNLRSTDDELRNMLANLFTDNAMLRKQVNSTMRRALKMGSISRSS NDGAPSSNNHVER

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32160			Phox (PX) domain-containing pr...		Potri.018G026000 [exp]	0	1
AT2G28390			SAND family protein (.1)		Potri.009G014400 [exp]	4.24	0.7952
AT5G47820		FRA1	FRAGILE FIBER 1, P-loop contai...		Potri.014G024700 [exp]	7.07	0.8412
AT5G16300			Vps51/Vps67 family (components...		Potri.010G177200 [exp]	7.34	0.8189
AT3G24515		UBC37	ubiquitin-conjugating enzyme 3...		Potri.006G157600 [exp]	12.16	0.7781
AT5G06390		FLA17	FASCICLIN-like arabinogalactan...		Potri.006G200300 [exp]	17.08	0.8282
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.005G156900 [exp]	18.22	0.7489
AT5G58160			actin binding (.1)		Potri.006G185601 [exp]	18.49	0.8242
AT2G40270			Protein kinase family protein ...		Potri.009G075400 [exp]	24.41	0.8241
AT4G39920		TFCC, POR	TUBULIN-FOLDING COFACTOR C, PO...		Potri.007G093800 [exp]	27.71	0.7638
					Potri.004G011300 [exp]	31.52	0.8022

Compare expression of checked genes

Potri.018G026000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.