Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32190 100 / 7e-23 Myosin heavy chain-related protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255800 [exp] 160 / 6e-44 AT4G32190 546 / 0.0 Myosin heavy chain-related protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041037 [exp] 67 / 6e-12 AT4G32190 380 / 1e-122 Myosin heavy chain-related protein (.1) Lus10006190 [exp] 64 / 4e-11 AT4G32190 387 / 1e-124 Myosin heavy chain-related protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.018G026300.2 pacid=42800949 polypeptide=Potri.018G026300.2.p locus=Potri.018G026300 ID=Potri.018G026300.2.v4.1 annot-version=v4.1 ATGAAACCTCAGTCTTGCATGATACACCCCGTTCTTCATCAAGTAAATGGCACTCCTACGAATCTAAGGAAATTTGAGGAAAAGAAGATAGAAGTTGCGG AGGCCACATCTAAACAAGTTGGAGAAACTAACAAGGCTTTAGAGGATCTTAGAAGAGTGAATAAGCTTCTTGCAGATGTGAGATCTGAACTGATTTCTTC ACAAAAATCTCTAACAGAACTTGAAGAACGGAGGACAAGTATCATGTCTTACATGACTAGTTTGACTGATGCCGAAATAGAAGCTCGAAATAAGGAGCTT GGACGAGAATTATCCACGGAGAAGGAGCTCATAGAAGAGTTACAAAAGGAGTTAGAGAAGGGAGATTGTCTCTGGAGCAGGCTATCGAGAGGGCGTTTTT TCTACAGCAGGAATCGCATCAGAAAAATACTGAAATTTGGGGGAGAAGTAAACCAAGAGGTCGCCGAGCTGAAGACGCTAATTAGCAGTAACGAAGAACT TGTCCGAGCCACCGCCACCACGCTAAAGGATAAAGAGGAGCATGTTCAGATTATGCAAGATGAATTGAACAATACAAGGAGCTCAAGAGTGAAAGAAATG GAAGTTCTAGCTGCACAGAGAGCTCCCACAATCAAATACGAGGAGCTTAAAATAGTTCTTGAGAGATTGGATACAAAAGAAAAGGAACTGAAAAACTTGA AGGAAGCAGCAGTTGAAGATGCTAACGATCCGAGGAAGCTTTATTCTTTAGCACGAGAGAGAATTGGTGAGAGAAGCATTAGAAACTTGGCTATAAAGAA ACTCAAATTAGAGGCCGTTCAACTTGAAGTTGAAGCTGCCACCGGTGATCCTCAAAAACTTGCAGAAACGAGTCGAGAACTTTTAAATAAAGCAAGCTTG TGCATTGAGGCTAATGCTGATAGTAGTACTTCCATGAAAAACGGCTCTGATCCTGACCTTGTTCTGTTAGAGAACAACTATGTTTCAAGGAGGTTAAAAC AAAGTCATCGTTGA
AA sequence Show only first row Show all	>Potri.018G026300.2 pacid=42800949 polypeptide=Potri.018G026300.2.p locus=Potri.018G026300 ID=Potri.018G026300.2.v4.1 annot-version=v4.1 MKPQSCMIHPVLHQVNGTPTNLRKFEEKKIEVAEATSKQVGETNKALEDLRRVNKLLADVRSELISSQKSLTELEERRTSIMSYMTSLTDAEIEARNKEL GRELSTEKELIEELQKELEKGDCLWSRLSRGRFFYSRNRIRKILKFGGEVNQEVAELKTLISSNEELVRATATTLKDKEEHVQIMQDELNNTRSSRVKEM EVLAAQRAPTIKYEELKIVLERLDTKEKELKNLKEAAVEDANDPRKLYSLARERIGERSIRNLAIKKLKLEAVQLEVEAATGDPQKLAETSRELLNKASL CIEANADSSTSMKNGSDPDLVLLENNYVSRRLKQSHR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32190			Myosin heavy chain-related pro...		Potri.018G026300 [exp]	0	1
AT3G48990			AMP-dependent synthetase and l...		Potri.015G144700 [exp]	5.74	0.7446
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Potri.007G064300 [exp]	6.55	0.7975	Pt-MLO8.2
AT3G06390			Uncharacterised protein family...		Potri.008G205000 [exp]	11.66	0.7805
AT2G03090		ATHEXPALPHA1.3,...	EXPANSIN 15, expansin A15 (.1)		Potri.001G001100 [exp]	16.61	0.7542	PtrEXPA10,EXP2.6
AT5G53390			O-acyltransferase (WSD1-like) ...		Potri.012G014200 [exp]	17.74	0.7857
AT1G74790			catalytics (.1)		Potri.015G067200 [exp]	18.54	0.7926
AT1G76410		ATL8	RING/U-box superfamily protein...		Potri.002G006400 [exp]	20.90	0.7243
AT5G58730			pfkB-like carbohydrate kinase ...		Potri.001G251500 [exp]	24.95	0.7539
AT1G55850		ATCSLE1	cellulose synthase like E1 (.1...		Potri.001G369100 [exp]	30.59	0.7533	ATCSLE1.1
AT5G06800	GARP		myb-like HTH transcriptional r...		Potri.016G047900 [exp]	35.15	0.7407

Compare expression of checked genes

Potri.018G026300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.