Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32250 810 / 0 Protein kinase superfamily protein (.1.2.3) AT5G13530 139 / 1e-33 KEG KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) AT4G38470 91 / 7e-19 STY46 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) AT5G50000 86 / 8e-18 Protein kinase superfamily protein (.1) AT4G35780 83 / 2e-16 STY17 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) AT5G01850 81 / 4e-16 Protein kinase superfamily protein (.1) AT2G32510 77 / 8e-15 MAPKKK17 mitogen-activated protein kinase kinase kinase 17 (.1) AT3G22750 76 / 2e-14 Protein kinase superfamily protein (.1) AT3G13530 77 / 3e-14 MAPKKK7, MAP3KE1 MAP3K EPSILON PROTEIN KINASE, mitogen-activated protein kinase kinase kinase 7 (.1) AT3G07980 77 / 4e-14 MAPKKK6, MAP3KE2 MAP3K EPSILON PROTEIN KINASE 2, mitogen-activated protein kinase kinase kinase 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255700 [exp] 1157 / 0 AT4G32250 828 / 0.0 Protein kinase superfamily protein (.1.2.3) Potri.001G029600 [exp] 144 / 2e-35 AT5G13530 2587 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.001G274900 [exp] 135 / 9e-33 AT5G13530 1856 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Potri.004G179100 [exp] 107 / 1e-24 AT4G35780 612 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179457 [exp] 102 / 4e-23 AT4G38470 654 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.004G179514 [exp] 100 / 5e-22 AT4G38470 786 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.009G139400 [exp] 99 / 1e-21 AT4G38470 807 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Potri.005G106200 [exp] 93 / 1e-19 AT4G35780 821 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1) Potri.007G060600 [exp] 93 / 1e-19 AT4G35780 793 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002923 [exp] 840 / 0 AT4G32250 716 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10001499 [exp] 828 / 0 AT4G32250 708 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10009358 [exp] 737 / 0 AT4G32250 677 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10019343 [exp] 684 / 0 AT4G32250 627 / 0.0 Protein kinase superfamily protein (.1.2.3) Lus10039491 [exp] 140 / 3e-34 AT5G13530 2343 / 0.0 KEEP ON GOING, protein kinases;ubiquitin-protein ligases (.1.2) Lus10002368 [exp] 91 / 2e-19 AT5G50000 659 / 0.0 Protein kinase superfamily protein (.1) Lus10042129 [exp] 91 / 3e-19 AT5G50000 657 / 0.0 Protein kinase superfamily protein (.1) Lus10025092 [exp] 91 / 1e-18 AT1G78610 779 / 0.0 mechanosensitive channel of small conductance-like 6 (.1) Lus10023989 [exp] 91 / 1e-18 AT4G38470 771 / 0.0 serine/threonine/tyrosine kinase 46, ACT-like protein tyrosine kinase family protein (.1) Lus10012517 [exp] 90 / 2e-18 AT4G35780 754 / 0.0 serine/threonine/tyrosine kinase 17, ACT-like protein tyrosine kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.018G026400.10 pacid=42800330 polypeptide=Potri.018G026400.10.p locus=Potri.018G026400 ID=Potri.018G026400.10.v4.1 annot-version=v4.1 ATGTCTGTTGTTGGTCTCATAATTTGCTTCTCTTTGCAGACAGCAATTTTGTTTCTCTGGCCTCTCTTTAATCAGTTCCTCAAGAGGGATAGAATGGCCA GCAAAGTTGTTCCTGCTCAACCCGTGACTCCTTTCGAGTTTGAGCTTTATGAGGATCCTGATCACCTTAGAACTGTGATGGCCTCGTCGAATCAGTCAAC TCACAGGATTGATCCTGCGAAATTGAAACTTAGACATAGAATTGGGAGGGGACCTTTTGGTGATGTTTGGTTGGCTACTCATCATCAATCCACTGAAGAT TACGATGAGTATCATGAAGTGGCTGTCAAGATGTTGCAACCTCTTAAGGAGGAACATATGAGGCTTGTGTTGGATAAGTTTGATGGTTTGTTTTCAAAGT GTCAAGGTGTAGAAAATGTGTGTTTTCTACATGGAATTTCAGTTATGAATGGAAAGATATGCATTGTTATGAAGTTTTATGAGGGATCAATTGGGGACAA AATGGCTCTCCTAAAAGGAGGGAAGCTCACATTACCCGATGTGTTGAGGTATGGGATAGAGTTGGCACAGGGAATTGCAGAGTTGCATGCAAAAGAAATC CTAGTTCTTAACCTTAAACCTTGTAGCTTCCTTCTTAATGAAAATGATCAAGCAGTTCTGGGAGATATTGGTATTCCTTACCTGCTATTCGGAATTCCAT TGACAAGCTCAGATATGCCTTGGAGGCTTGGAACCCCAAACTACATGGCTCCAGAACAGTGGCAGCCAGAAATAAGAGGTCCAATATCCTCTGAGACTGA TTCGTGGGGATTTGGGTGCAGCATTGTGGAGATGTTGACTGGTGTTCTACCTTGGTGTGGGAAGTCAATTGAAGAAATTTATGACTCAGTGGTTAGGAAA CAAGAGAAACCACATATTCCCGAGGGCCTCCCTCCTCCAGTTGAAAATATTCTTCTTGGCTGTTTTGAATATGACTTGAGGAGCCGCCCCTTGATGACAG ACATATTACGCGTATTCAAAAGCTCGCAGAATGCAGTTTTTGTAGATGGAGGCTGGACAGGGTTTGGCAGCAGAACAATCCTGGAGAAATCCAGTGGTGC TGGTTACACAGAGTGGTTTCTGTCAAAGGATCATCTGCAAGTGGGAGACATGGTGCGTTCCAGGAGGCCACCTAATTCGTGCAAACCTGAAAATATGGAT GTCCCAGAAGGAACTGTAGTGGGTCTAGAACGCAACCCTGATCGAGATGGTTTTGTTTTGGTGAGTGTTCATGGCATCCATGACCCATTAAGACTTCCTG TCTCAACCTTGGAAAAGGTCTCTTTCGGCCTTGCAGCTGGGGATTGGGTACACCTGAAGGAGGAAAACAATAAGCACTCGCCAGTTGGCATTCTTCATTC CATAAATCGTGATGGAAGTGTGGCTGTTGGATTTATAGGTGTGGAAACTCTATGGAAAGGAAAATATTCAGAGCTTCAAATGGCTGAATCATACTTTGTT GGTCAGTTTGTGAGACTGAAAACTAATGTTCTTAGCCCTCGATTTGAATGGCCTCGTAAAACAGGTGGGGCCTGGGCTACTGGGAAGATTTGGTGGATCC TACCTAATGGTTGCCTCATTGTCAAGTTCCCTGGAAGATTTACAATTGGACAAGAAAATAGCAGTTTCTTGGCTGATCCAGCTGAAGTGGAAGTAGTTTC TTTTAATACTTGTCCTGGGGTCGTCAAAAAATATCAACACCTTGAGGATTTTCACTGGGCTGTACGACCTCTTGTGATAGCTTTGGGTATATTTACAGCC ATGAAGGTTGGATTTTTCACTGGGAAGAAAATACGGAGATCAAGAGTGAACAGGCCGCGGGGTAATGCAGTGCAAAGTAATGGCCAATATACGGATGGTC AGACTAGCGGCGATGGTAGCAACCAAGCATGGTTTCCACCATCCGTGAAAAATATCCTTGGTGTTAGCCCTGCTGCTGCCCGGTAG
AA sequence Show only first row Show all	>Potri.018G026400.10 pacid=42800330 polypeptide=Potri.018G026400.10.p locus=Potri.018G026400 ID=Potri.018G026400.10.v4.1 annot-version=v4.1 MSVVGLIICFSLQTAILFLWPLFNQFLKRDRMASKVVPAQPVTPFEFELYEDPDHLRTVMASSNQSTHRIDPAKLKLRHRIGRGPFGDVWLATHHQSTED YDEYHEVAVKMLQPLKEEHMRLVLDKFDGLFSKCQGVENVCFLHGISVMNGKICIVMKFYEGSIGDKMALLKGGKLTLPDVLRYGIELAQGIAELHAKEI LVLNLKPCSFLLNENDQAVLGDIGIPYLLFGIPLTSSDMPWRLGTPNYMAPEQWQPEIRGPISSETDSWGFGCSIVEMLTGVLPWCGKSIEEIYDSVVRK QEKPHIPEGLPPPVENILLGCFEYDLRSRPLMTDILRVFKSSQNAVFVDGGWTGFGSRTILEKSSGAGYTEWFLSKDHLQVGDMVRSRRPPNSCKPENMD VPEGTVVGLERNPDRDGFVLVSVHGIHDPLRLPVSTLEKVSFGLAAGDWVHLKEENNKHSPVGILHSINRDGSVAVGFIGVETLWKGKYSELQMAESYFV GQFVRLKTNVLSPRFEWPRKTGGAWATGKIWWILPNGCLIVKFPGRFTIGQENSSFLADPAEVEVVSFNTCPGVVKKYQHLEDFHWAVRPLVIALGIFTA MKVGFFTGKKIRRSRVNRPRGNAVQSNGQYTDGQTSGDGSNQAWFPPSVKNILGVSPAAAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G32250			Protein kinase superfamily pro...		Potri.018G026400 [exp]	0	1
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036100 [exp]	2.00	0.8736
AT2G43400		ETFQO	electron-transfer flavoprotein...		Potri.017G027500 [exp]	3.87	0.8626
AT4G08540			DNA-directed RNA polymerase II...		Potri.002G090900 [exp]	6.16	0.8086
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036400 [exp]	12.48	0.8560
AT5G41130			Esterase/lipase/thioesterase f...		Potri.001G324400 [exp]	13.26	0.8197
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036532 [exp]	13.41	0.8284
AT1G11340			S-locus lectin protein kinase ...		Potri.011G036466 [exp]	14.14	0.8257
AT1G11340			S-locus lectin protein kinase ...		Potri.011G035800 [exp]	14.28	0.8596
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.018G118035 [exp]	15.87	0.8210
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Potri.013G148400 [exp]	19.36	0.8573

Compare expression of checked genes

Potri.018G026400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.