Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G35530 194 / 2e-63 phosphatidylinositolglycan-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255301 [exp] 238 / 3e-81 AT4G35530 162 / 3e-51 phosphatidylinositolglycan-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001500 [exp] 69 / 8e-15 ND 62 / 3e-17 Lus10002922 [exp] 0 / 1 AT4G35530 80 / 2e-21 phosphatidylinositolglycan-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10181 [poplar] [flax] PIG-H GPI-GlcNAc transferase complex, PIG-H component
Representative CDS sequence Show only first row Show all	>Potri.018G026700.8 pacid=42801869 polypeptide=Potri.018G026700.8.p locus=Potri.018G026700 ID=Potri.018G026700.8.v4.1 annot-version=v4.1 ATGACCGAGTTTTCGATTGCTAATCGGAGATATGGTTACCTACATGAACGGAAGTGGCCTTCGGAAGCAATTGATATGCACCATGTTATGGTGAGGAAGA GTAATGGAAAGGGTTTCTTCGTGTTTTTTTCAGCTCTCATCGTTCTCGCAAATGCTTCATATCTCCTCCTAGTCAAGAATAAATCAATCAGCGTTCTTTT GTGGAGCTTTTTTTTGAGTGTTTTCCTCGTCAAACTAATGTTTTGGAAGCGTGTCATGAAAGAGTCTGTCATGGTTATGCCAACTTTTGGAGTTCAACTT GAAACACACTATTTGAGTGGAAGAATTGTCCGTCGCTTTGTTCCTATTGACAAGATTTTGAAACCTGTGTTGCTGGAATGTGTGTCGCCAATTACTTGTT ACTGGAGCTTGTCTCTGCTTCTGCGTGGAGAAGCAGAACTAATGTTGGTTTTTAAGGAATTACGACCTCCTGTGAAGATGTTGATCCCTATCTGGAAGGC CTTGTGTTGTGCTTCTGGCATTAAAGAAGGCTCAGACACCTTGAAGGATGTCAGCTAA
AA sequence Show only first row Show all	>Potri.018G026700.8 pacid=42801869 polypeptide=Potri.018G026700.8.p locus=Potri.018G026700 ID=Potri.018G026700.8.v4.1 annot-version=v4.1 MTEFSIANRRYGYLHERKWPSEAIDMHHVMVRKSNGKGFFVFFSALIVLANASYLLLVKNKSISVLLWSFFLSVFLVKLMFWKRVMKESVMVMPTFGVQL ETHYLSGRIVRRFVPIDKILKPVLLECVSPITCYWSLSLLLRGEAELMLVFKELRPPVKMLIPIWKALCCASGIKEGSDTLKDVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G35530			phosphatidylinositolglycan-rel...		Potri.018G026700 [exp]	0	1
AT5G10930		CIPK5, SnRK3.24	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G019900 [exp]	9.38	0.6014
AT3G61600		ATPOB1	POZ/BTB containin G-protein 1 ...		Potri.003G135300 [exp]	14.00	0.6023
AT4G30310			FGGY family of carbohydrate ki...		Potri.018G095700 [exp]	23.13	0.6060
AT2G30110		ATUBA1, MOS5	MODIFIER OF SNC1 5, ubiquitin-...		Potri.009G075700 [exp]	25.65	0.5823
AT3G10330			Cyclin-like family protein (.1...		Potri.006G048400 [exp]	32.84	0.5826	TFIIB1.2
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.010G161800 [exp]	36.46	0.5494
AT5G64500			Major facilitator superfamily ...		Potri.001G286600 [exp]	49.41	0.5502
AT3G61610			Galactose mutarotase-like supe...		Potri.002G167200 [exp]	51.84	0.5573
AT2G23140			RING/U-box superfamily protein...		Potri.007G051000 [exp]	56.32	0.5344
AT3G61200			Thioesterase superfamily prote...		Potri.014G078900 [exp]	66.33	0.5604

Compare expression of checked genes

Potri.018G026700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.