Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56130 491 / 1e-161 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56140 480 / 2e-157 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56120 476 / 6e-156 Leucine-rich repeat transmembrane protein kinase (.1) AT1G56145 473 / 4e-155 Leucine-rich repeat transmembrane protein kinase (.1.2) AT3G14840 355 / 5e-110 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G53440 347 / 8e-107 Leucine-rich repeat transmembrane protein kinase (.1) AT1G07650 340 / 2e-104 Leucine-rich repeat transmembrane protein kinase (.1.2) AT1G29740 330 / 2e-100 Leucine-rich repeat transmembrane protein kinase (.1) AT1G53420 327 / 5e-100 Leucine-rich repeat transmembrane protein kinase (.1) AT1G29750 328 / 6e-100 RKF1 receptor-like kinase in flowers 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G255100 [exp] 1103 / 0 AT1G56130 517 / 8e-172 Leucine-rich repeat transmembrane protein kinase (.1) Potri.007G067900 [exp] 538 / 9e-180 AT1G56130 1290 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G148000 [exp] 521 / 2e-173 AT1G56145 1063 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G082900 [exp] 490 / 3e-161 AT1G56140 1097 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.004G135500 [exp] 394 / 7e-125 AT1G07650 1324 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Potri.001G385400 [exp] 379 / 4e-119 AT1G53440 1231 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.001G385600 [exp] 378 / 2e-118 AT1G53440 1202 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.011G106400 [exp] 375 / 1e-117 AT1G53440 1268 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Potri.003G025566 [exp] 367 / 1e-117 AT1G53440 754 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031199 [exp] 470 / 1e-153 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10010951 [exp] 377 / 2e-119 AT1G07650 979 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10031374 [exp] 368 / 6e-114 AT1G07650 1221 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1.2) Lus10005550 [exp] 357 / 5e-111 AT1G53440 1223 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038153 [exp] 352 / 2e-108 AT1G53440 1046 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10015239 [exp] 340 / 1e-104 AT1G29750 1189 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10042505 [exp] 335 / 8e-102 AT1G53440 1013 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10041937 [exp] 298 / 2e-89 AT1G53440 1138 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10005418 [exp] 192 / 5e-52 AT1G29750 800 / 0.0 receptor-like kinase in flowers 1 (.1.2) Lus10019036 [exp] 169 / 1e-43 AT4G08850 891 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.018G026800.2 pacid=42801808 polypeptide=Potri.018G026800.2.p locus=Potri.018G026800 ID=Potri.018G026800.2.v4.1 annot-version=v4.1 ATGGGGGTCTTGAGCTTCTGTTTCTTTGTTTTTTGGGTGTCTCAGGTTGTTTTTGCACAACAAACTACTGATCCTAATGAAGTGGATGCTCTTAACAGAT TGATAGATTACTGGAATTTGAGAGACAAGTTGAATATTACTAATGACCCTTGCATCCAGAATGCAGCATGGGCTAAAAAACAAGCAAACCCTAGAGTTGC TTGTAATTGCAGCAGCAACCCCTGCCATATCACTCATCTGAAGATTCATGCTTTGGACATTTCTGGTGAGTTACCAAGTGAATTGTTTGTCCTGAAGGAG CTGATGAACTTGGATTTTGGTAAGAATGTACTAAATGGTGCAATCCCAGCAGAAATTGAACGGTTATCAAACATGCAATACCTTAATCTAGGCATCAACA ATTTCACAGGTGTAGTGCCTCAAGAACTTGGAAATCTAACCAAGTTGATTACTCTAGATTTTGGCTCCAACAATTTCATTGGACCACTACCCACATCCCT TGGAAAGTTGACATCCTTGCAGGAGCTGTATATTAATAGCAGTGGAGTCAGTGGACGGATTCCGCAAGAATTTGCAAATCTGAAATCTCTCCGAACTCTC TGGGCATCTGATAACTTGTTCACTGGAAAGCTTCCGGCCTTCTTCGGAAATCTGACAAAACTCAGGAACCTGCGGCTTCAAGGGACATTGCTTGAAGGTC CAATTCCAAGCAGTTTTAGTGCTCTAAAGAAGCTGGGAGACCTGAGAATCGGTGATCTTAATGGTGAAGATTCTTCTCTTGAGTTCTTGCTAGACCAGAA AAATTTGACTATATTGATTTTGAGAAACTGTCTACTCTCGGGACAAATTCCAGACCAACTGGGAAACTTCTCCCAGTTGCAAGAACTGGATTTGAGTTTC AACAAATTAACAGGTCAAATTCCAGACTCATTTCAAGATTTAGCTTCATTACACTATCTGTATCTTGGAAGTAACAACTTGAGTGGGCAACTCCCTGCAA ATATCATAGGTCTAAATCTAATTGCAATAGATGTCTCATTCAATCCCCTTTCTGGAAATTTGCCACAAAACTCTATGAGGGTTGGATTATCAATGAATGC TGTTGGAACTTCCATTAATGCAAACAATTTACAGGGAAAAGCTTCTGGGATGTTGCAGTGCCTCAAAGCTGATTTCAAGTGCAGCAACAAAGTTCCATCA AAAACATTTTCTGTCAAATGTGGAGGTACGGCCAAGACATCTGCATCTGGGATAGAATATGAGGGTGATTTTGAATCAATGGGAGCTGCTTCACTGTACA CAAGCTCAGACAATCTGTGGGCAGTAAGCAATACTGGGAATTTCATTTCGAACCCAAACGGACCACAATATTTAACACAAACAGGTTCTCAAATCACTGG AACTTTGGACTCTGAGCTATATAAGACAGCAAGGATTTCACCGAGCTCGCTGAGGTACTATGGCCTTGGTCTAAAGAATGGAAGATACAGTGTTGAGCTT CACTTTGCAGAGATAGGAATGGATGACTCTCATTCTTGGAAAGGCCTCGGAAGGCGCTTATTCGACATTTACATACAGGGAGAAATAGTTCTTAAGGACT TCAACATTAAAAACGAAGCTGGTGGATCCAAAAAAGCGTTGATTAAAACATTTGAAGCAAATGTGACCAACACAATCATGGACATTCACTTCTTCTGGGC TGGAAAAGGCACTTGCTGCATTCCATATCAAGGAACATATGGACCTTTAGTATCAGCCATTCATGTTTCTCAAGTATCTGATGGTGCTGGCTCTTCCAAG AGGGACAAGAAACGTGTAGGAAAACTTGTTGGGATATCAATGGCATGTGTAGCTGGGCTTGTGATCATCTCTTCTGTATTTTATCTATGGTGGATAAAAG AGGATTCATCTCAGCACATGAGAATTTACACTGGTCACCCAGGTAATGATTAA
AA sequence Show only first row Show all	>Potri.018G026800.2 pacid=42801808 polypeptide=Potri.018G026800.2.p locus=Potri.018G026800 ID=Potri.018G026800.2.v4.1 annot-version=v4.1 MGVLSFCFFVFWVSQVVFAQQTTDPNEVDALNRLIDYWNLRDKLNITNDPCIQNAAWAKKQANPRVACNCSSNPCHITHLKIHALDISGELPSELFVLKE LMNLDFGKNVLNGAIPAEIERLSNMQYLNLGINNFTGVVPQELGNLTKLITLDFGSNNFIGPLPTSLGKLTSLQELYINSSGVSGRIPQEFANLKSLRTL WASDNLFTGKLPAFFGNLTKLRNLRLQGTLLEGPIPSSFSALKKLGDLRIGDLNGEDSSLEFLLDQKNLTILILRNCLLSGQIPDQLGNFSQLQELDLSF NKLTGQIPDSFQDLASLHYLYLGSNNLSGQLPANIIGLNLIAIDVSFNPLSGNLPQNSMRVGLSMNAVGTSINANNLQGKASGMLQCLKADFKCSNKVPS KTFSVKCGGTAKTSASGIEYEGDFESMGAASLYTSSDNLWAVSNTGNFISNPNGPQYLTQTGSQITGTLDSELYKTARISPSSLRYYGLGLKNGRYSVEL HFAEIGMDDSHSWKGLGRRLFDIYIQGEIVLKDFNIKNEAGGSKKALIKTFEANVTNTIMDIHFFWAGKGTCCIPYQGTYGPLVSAIHVSQVSDGAGSSK RDKKRVGKLVGISMACVAGLVIISSVFYLWWIKEDSSQHMRIYTGHPGND

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56130			Leucine-rich repeat transmembr...		Potri.018G026800 [exp]	0	1
AT3G49690	MYB	ATMYB84, RAX3	REGULATOR OF AXILLARY MERISTEM...		Potri.018G058800 [exp]	2.44	0.9307
AT5G25260			SPFH/Band 7/PHB domain-contain...		Potri.018G022900 [exp]	7.74	0.9020
					Potri.018G118900 [exp]	10.53	0.9285
					Potri.019G016000 [exp]	10.67	0.8922
AT1G08080		ATACA7, ACA7	A. THALIANA ALPHA CARBONIC ANH...		Potri.006G121900 [exp]	14.00	0.9278
AT1G11330			S-locus lectin protein kinase ...		Potri.011G037800 [exp]	17.23	0.9055
AT3G22800			Leucine-rich repeat (LRR) fami...		Potri.010G083000 [exp]	21.33	0.9077
AT4G03965			RING/U-box superfamily protein...		Potri.004G003101 [exp]	22.80	0.9055
AT1G51190	AP2_ERF	PLT2	PLETHORA 2, Integrase-type DNA...		Potri.001G018400 [exp]	24.69	0.9124	RAP21
					Potri.013G117300 [exp]	25.33	0.9123

Compare expression of checked genes

Potri.018G026800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.